Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00477 ATGGATGAGAGAACAAGACTATGCTCACCCAACGTAGACCCAAGAAACGGTTTCAACCGCGCTTCCAGAACCTTCCACAGCCTCAAGCCACCACTCCTCCTCCCTCCTCCGATCGCCACCGTCTCCGCCGAAACCTACGCCTTCTCCCTCCGCCACAACTCACCGTTTCCGGACTCCACTACCGCCATCATCGATGCTGCCACCGGCCACCGCCTCTCTTACGGCGAGCTCATCCACCGCGCCGAAACCCTAGCCTCGAATCTCAGCACTGTCATCAAACTCTCCAAAGGCGACACCGCGCTGGTTCTCTCCCCAAACCTCATCCAAGTTCCGATCCTCTGCTTCGCACTCCTCTCCCTCGGCGTGGTCGTCTCCCCCGCGAACCCTCTCTCCACGCGCTCCGAGCTCATGCGCCTCTTCCACCTCAGCAAACCCTCAATCGTCTTCGCAGTATCTTCAGTCGTTGAAAAAACACGCGAGTTTCATGTCCGAACCGTCCTCCTCGACTCGCCCGAGTTCGACTCGCTCACGAAGACTCAGATTCAGACTCCGAGTCCACTCGTTTCCTCCGCGCGAGTGACTCAGTCCGACGTGGCAGCGATTCTGTACTCCTCCGGCACCACGGGGATGGTGAAGGGCGTGATGCTCACGCACCGTAACTTAACGGCGTTAGCCGCGGGATACGACGCCGTTCGAGCGAAGAGAAAGTACCCCGCGGTGTTCCTCTATACGATGCCGTTTTTCCACGTGTACGGTTTCACGTTCTGCTTTAGGGCGATGGTGCTGTCGGAGACGGTGGTGATCATGGAGAGGTTCAGTATGAGGGTGATGCTGAGCACCGTGGAGAGGCTCCGAGTGACGCACCTCGCGGTGGTGCCGCCGCTGATGGTGGCTTTGACGAAAGACAGCGTCACCGACGGGTACGATTTGAAGACGTTGGAAGGGGTGGCGTGCGGTTCGGCTCCACTGGGAAAGGAAACTGCTGAGGCTTTCAAAGCCAAGTTCCCCAACGTCGTGATCATCCAGGGATACGGTTTAACTGAGTCAACTGCCGGTGTTGCCCGAACCTCTCCAGAGGAGGCTAATAGGACAGGAACAACAGGTAGACTGGTATCAGGATTGGAAGCCAAAATTGTGAACCCAACCACAGGAGAAGCCATGTTTCCCGGTGAACAAGGAGAACTTTGGATCAGAGCACCTTCTATTATGAAAGGTTATGTTGGTGACCCTGAAGCCACTTCAGCAACTTTGGTGGACGGGTGGTTAAGGACTGGGGACCTCTGTTATTTCGATAAGGAAGGTTTCTTGTATATTGTAGATAGATTGAAAGAGTTGATCAAATACAAGGGCTACCAGATTGCTCCGGCAGAGCTAGAACAGTATCTCCTGTCTCACCCAGAGATAAATGATGCCGCGGTTATTCCATACCCTGATGAAGAAGCAGGCCAGGTGCCCATGGCGTTTGTGGTAAGACAACCCCAAAGTTCCCTTGGTGAAGCAGAAATAATTGATTTTGTCGCCAAACAGGTTGCACCATACAAGAAAATAAGGCGCGTAGCATTTGTTGATTCAATACCGAAGAATGCCTCGGGAAAGATACTGAGGAAGGACTTAAACAAACTTGCTCTCTCTAGATTATAA 1641 0.5375 MDERTRLCSPNVDPRNGFNRASRTFHSLKPPLLLPPPIATVSAETYAFSLRHNSPFPDSTTAIIDAATGHRLSYGELIHRAETLASNLSTVIKLSKGDTALVLSPNLIQVPILCFALLSLGVVVSPANPLSTRSELMRLFHLSKPSIVFAVSSVVEKTREFHVRTVLLDSPEFDSLTKTQIQTPSPLVSSARVTQSDVAAILYSSGTTGMVKGVMLTHRNLTALAAGYDAVRAKRKYPAVFLYTMPFFHVYGFTFCFRAMVLSETVVIMERFSMRVMLSTVERLRVTHLAVVPPLMVALTKDSVTDGYDLKTLEGVACGSAPLGKETAEAFKAKFPNVVIIQGYGLTESTAGVARTSPEEANRTGTTGRLVSGLEAKIVNPTTGEAMFPGEQGELWIRAPSIMKGYVGDPEATSATLVDGWLRTGDLCYFDKEGFLYIVDRLKELIKYKGYQIAPAELEQYLLSHPEINDAAVIPYPDEEAGQVPMAFVVRQPQSSLGEAEIIDFVAKQVAPYKKIRRVAFVDSIPKNASGKILRKDLNKLALSRL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00477 546 ProSitePatterns Putative AMP-binding domain signature. 201 212 IPR020845 -
Pumo11g00477 546 Pfam AMP-binding enzyme C-terminal domain 457 532 IPR025110 -
Pumo11g00477 546 FunFam 4-coumarate--CoA ligase 2 444 545 - -
Pumo11g00477 546 CDD 4CL 53 538 - -
Pumo11g00477 546 Gene3D - 444 544 IPR045851 -
Pumo11g00477 546 Pfam AMP-binding enzyme 59 448 IPR000873 -
Pumo11g00477 546 Gene3D - 37 443 IPR042099 -
Pumo11g00477 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 20 540 - -
Pumo11g00477 546 SUPERFAMILY Acetyl-CoA synthetase-like 59 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00477 Pumo-Chr11 17519032 17527434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00477 12 543 Monolignol Biosynthesis Gene Families AT5G63380 50.274 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00477 K01904 - gmx:100801143 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g00477 11 17519032 17527434 Pumo11g00477 11 17519032 17527434 ECH