Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00473 ATGAAGACTTTCTCCTCAATTCAACCGCCCCACCATTTTCGTTGCACAAGATTTCTCTCTCACACTACCCCAAGGACTCAACTTTCTTTTCCTGCAAGGGTCTTCTTTTGCCAGGCAAAATCTGGCATAGACGGATCCTTGAATTTAAAAGTGGTGTCTCCCACTCTGTTAGTAGCAGAAAAGGAAGAAGCCAAGGCTGTGTTGACCTTGTTTTTGAAGAAACAAGGTTTGAGCAATGCGATTGCTGCTAGAACCAGCAAGAGGTCAGATCATTTTATTGATCACCTTGTCTCAAGGCTTCACTCTAAACACAAATCTTGGTATCTCGCAGGGAGAGAGCTTACAACTCTGGAGATCAGGGACGCACTTATCCCTTATCTTGAATCTCTTTTTGAAGAGCATGGAGACATTCTAGTGAATGTAGTGGAAAACTATCCAAATCCACCTGTTAAGGATAAATCAGCTGTGCCGATTCCTCCTTCTAATCCAGTGTTAGACTCTAAGAAGCTTAAAGCTGTGTCTCGAGTGAGTGAGATAGACCCAGATGGTGGCAATCATCGCCCTCATATTGTCTATCTCATGGAACTTGGTATGGATATTGAGCAGATTAGGAGTATCACACGACGATTCCCATCTTTTGCCTACTATAGCTTGGAGGGTAAAATTAAGCCAGTGGTTGAGTTTTTTCTTGAACTTGGAGTGCCAAAAGAGAACATTCCCACTATCCTCACTAAAAGGCCTCAATTATGTGGAATCAGTCTATCTGAAAATCTTAAACCCACCATGAAGTTCTTTGAATCTTTGGGTGTTGACAAGAAGCAATGGCCAAAGGTGATCTATCGCTTCCCAGCGCTGCTAACTTATAGCAGGCCAAAAGTGATGGAAAGCATAGATTTTCTCCTTGAATTAGGCCTCTCAGAAGAGAGTATAGGTAAGATTTTAACTCGCTGCCCCAATATTGTTAGTTACAGTGTAGAGGACAATCTCCGACCTACGGCTAAGTACTTCCGTTCTTTGGGGGTTGATGTTGGCATTCTTCTCTTCAGATGCCCACAGAATTTTGGTCTTAGCATTGAGACCAACCTAAAGCCTGTAACAGAATTTTTCTTGGAGAGGGGATACACTTTGGAAGAAATTGGGACCATGATTTCAAGATATGGAGCCTTGTATACTTTCAGCTTGACTGAAAATTTGATTCCAAAATGGGATTTCTTTTTGACCACAGGTTACCCAAAATCTGAGTTGGTTAAGTTCCCTCAATTTTTTGGATACAATTTAGAGGAAAGGATTAAACCTAGATTTGCAATTATGAAAAAATCTGGAGTAAAGTTACTGCTGAACCAGGTTCTTTCACTGTCAAGCAGCAACTTTGATGAAGCCTTGAAAAAGAAAATGAAGAAAATGCAAGTTAGTTAG 1416 0.411 MKTFSSIQPPHHFRCTRFLSHTTPRTQLSFPARVFFCQAKSGIDGSLNLKVVSPTLLVAEKEEAKAVLTLFLKKQGLSNAIAARTSKRSDHFIDHLVSRLHSKHKSWYLAGRELTTLEIRDALIPYLESLFEEHGDILVNVVENYPNPPVKDKSAVPIPPSNPVLDSKKLKAVSRVSEIDPDGGNHRPHIVYLMELGMDIEQIRSITRRFPSFAYYSLEGKIKPVVEFFLELGVPKENIPTILTKRPQLCGISLSENLKPTMKFFESLGVDKKQWPKVIYRFPALLTYSRPKVMESIDFLLELGLSEESIGKILTRCPNIVSYSVEDNLRPTAKYFRSLGVDVGILLFRCPQNFGLSIETNLKPVTEFFLERGYTLEEIGTMISRYGALYTFSLTENLIPKWDFFLTTGYPKSELVKFPQFFGYNLEERIKPRFAIMKKSGVKLLLNQVLSLSSSNFDEALKKKMKKMQVS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00473 471 Pfam mTERF 192 371 IPR003690 GO:0003690|GO:0006355
Pumo11g00473 471 Pfam mTERF 361 457 IPR003690 GO:0003690|GO:0006355
Pumo11g00473 471 FunFam Transcription termination factor MTERF5 chloroplastic 247 467 - -
Pumo11g00473 471 PANTHER CGI-12 PROTEIN-RELATED 129 462 IPR003690 GO:0003690|GO:0006355
Pumo11g00473 471 SMART mt_12 412 443 IPR003690 GO:0003690|GO:0006355
Pumo11g00473 471 SMART mt_12 240 271 IPR003690 GO:0003690|GO:0006355
Pumo11g00473 471 SMART mt_12 344 375 IPR003690 GO:0003690|GO:0006355
Pumo11g00473 471 SMART mt_12 380 411 IPR003690 GO:0003690|GO:0006355
Pumo11g00473 471 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Pumo11g00473 471 SMART mt_12 276 306 IPR003690 GO:0003690|GO:0006355
Pumo11g00473 471 SMART mt_12 311 342 IPR003690 GO:0003690|GO:0006355
Pumo11g00473 471 Gene3D Transcription termination factor 3, mitochondrial 254 467 IPR038538 -
Pumo11g00473 471 Gene3D Transcription termination factor 3, mitochondrial 166 253 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00473 Pumo-Chr11 17419940 17423896 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pumo11g00473 mTERF 7.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00473 K15032 - gmx:100781900 879.782