Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00462 ATGTCTCCTACAGCATTAGGTATATTGAAGGAGAAGGAACGTGATAACTTACCAACAACATTTGATTTTTCAACCATCGATATTGCCACAAATCACTTTTCTAACACGAACAAGTTAGGAGAAGGTGGCTTTGGACCGGGCATATTGGTAGATGGACAAGAGATTGCAGTCAAGAGGCTTTCTAAAACTTCAAGACAAGGAACTGAGGAGTTCAAAAATGAAGTAAAGTTGATGGCAACACTTCAGCACCATAATCTTGTAAAACTTCTTGGTTGTTCTATCCAACAAGATGAAAAGTTGTTGATCTATGAATTCATGCCCAATAGAAGCTTGGATTACTTTATTTTTGATACAACGCAAGTTAAATTACTAGATTGGACAAAGCACTTGGAAATTATTGAGGGAATTGCTCGAGGACTTTTGTATATTCATCAAGATTCTACAATAAGAATCATACATAGAGATCTCAAAACAAGTAATATTCTTCTTGATAACAATATGATTCCAAAGATATCAGATTTTGGGTTAGCAAGAACATTTGGAGGAGATCAAGCTGAGACAAATACAAATAGAGTAATGGGAACATATGGTTATATGCCTCCAGAATATGCAGTGCATGGGTCTTTCTCAACCAAATCTGATGTTTTTAGTTTCGGTGTAATTGTTATTGAGATAATTAGTGGGAGAAAGAATCATGGATTTCATGACCCTCACCATCATCATCTTAACCTTCTAGGCCATGTAAGCTTGAAGTGTTTTCAATCTTGTGATACTCCCAAAACCAAGCCAGCCTGGGTTCTGCATAGGACAAGATAA 816 0.364 MSPTALGILKEKERDNLPTTFDFSTIDIATNHFSNTNKLGEGGFGPGILVDGQEIAVKRLSKTSRQGTEEFKNEVKLMATLQHHNLVKLLGCSIQQDEKLLIYEFMPNRSLDYFIFDTTQVKLLDWTKHLEIIEGIARGLLYIHQDSTIRIIHRDLKTSNILLDNNMIPKISDFGLARTFGGDQAETNTNRVMGTYGYMPPEYAVHGSFSTKSDVFSFGVIVIEIISGRKNHGFHDPHHHHLNLLGHVSLKCFQSCDTPKTKPAWVLHRTR 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00462 271 Pfam Protein tyrosine and serine/threonine kinase 37 231 IPR001245 GO:0004672|GO:0006468
Pumo11g00462 271 SUPERFAMILY Protein kinase-like (PK-like) 15 241 IPR011009 -
Pumo11g00462 271 SMART serkin_6 33 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00462 271 Gene3D Transferase(Phosphotransferase) domain 1 106 264 - -
Pumo11g00462 271 ProSiteProfiles Protein kinase domain profile. 33 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00462 271 FunFam Uncharacterized protein 37 105 - -
Pumo11g00462 271 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 246 - -
Pumo11g00462 271 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 106 197 - -
Pumo11g00462 271 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Pumo11g00462 271 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00462 Pumo-Chr11 16766081 16767177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00462 21 236 Receptor kinase-like Gene Family AT4G05200 61.187 2.40e-96 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo11g00462 PK_Tyr_Ser-Thr 4.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00462 - - tpra:123915365 399.053