Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00461 ATGCAGGAGTTCTCACTTTCCTCTTTTGTTGAGAGAATTTTCACTTTGAATTGTTTTACTCACCAGATGGCTGTTGTGTTTGACAAGGTCGTGGGTATTTCACCTTGCAAACAGACTTGGTCATTGAAAGTTAGGGTAATCCGTGTATGGCATATGTACCCTGTTGGTTCTGTCAATTCTGATAAGCCATTTGCTTTGGAAATGGTTTTAATTGATTATGAAGGTTGTAAGATTCAAGCCACTATAAGAAAGCCAATGATGAGGAAATTTCATCGTTGTGTAGTTGAGGGTGAAGTTTATAAGATGAGTTTCTTTGGGGTGATTCCTAATTCTGGATCTTATAGGGCTGCGAACCATGAGTACAAACTTATCTTTCATGCCAAAACATCTATTAATCGTTGTGATGATGGATCAATTCCAAAGAATGGTTTCTCTATAATGGATTCCGATCAAGTTAACCAAACAAATGGCCAGTGTGATTATCTCATTGATGTTTTGGGTGTAATCACTGCTGTATCTGAAGAGAGATTATCTGTCAAAGATGGCAAAACTACAAGGCTTATTGTTTTCAAGATGCACGACGACAAAGGTAAGATGCACTGTGCATTGTTTGGTGACTATGTTGATACTATTAATGAACTTATTGCTGGACGTGGGAAAGAATTACCAACTATCCTTATACAATTTGCTAAAATCAAAACATACAAGGGTCAGACTGTTGTGCAGAATGTAATGACCATGTCTAGAGTTATAGTAGAACCACAAACTGATGCGGCAATGCAACTTAAGGCCAGGATGACTGCGATTGGATTTCTTCATGATGGTCCTTTGGCTGTTATCGAGGACAAGAAGAAATTTGTTCCAATGAAACAAGAGTTTCTGGAAATGTTTCCTCGGAAAACTATTTTTCAAATTCATACAATTGAAGAGGATGGAGTATTTATTGTATTGGGAACCATTGTTTCTGTTCTTGATAATTATCAATGGTGGTATGAAGCCTACAAATGCAATAGGGCAGCCACCCTTAAAGGTGGAATGAAATATTGTTCTTCTTGCCAGGTTAACGTGGTTGAAATAACTCATAGGTATTATAAGCTTAGACTGGAGGTGTTTGATGGGAGTGATACTGCTGCGTTTATCGCGTTTGACAGTGATTGTTTTAAACTACTTAATGAATCATGTGATTCTTTGGTCAAGGACATTACGTTGTAA 1212 0.3746 MQEFSLSSFVERIFTLNCFTHQMAVVFDKVVGISPCKQTWSLKVRVIRVWHMYPVGSVNSDKPFALEMVLIDYEGCKIQATIRKPMMRKFHRCVVEGEVYKMSFFGVIPNSGSYRAANHEYKLIFHAKTSINRCDDGSIPKNGFSIMDSDQVNQTNGQCDYLIDVLGVITAVSEERLSVKDGKTTRLIVFKMHDDKGKMHCALFGDYVDTINELIAGRGKELPTILIQFAKIKTYKGQTVVQNVMTMSRVIVEPQTDAAMQLKARMTAIGFLHDGPLAVIEDKKKFVPMKQEFLEMFPRKTIFQIHTIEEDGVFIVLGTIVSVLDNYQWWYEAYKCNRAATLKGGMKYCSSCQVNVVEITHRYYKLRLEVFDGSDTAAFIAFDSDCFKLLNESCDSLVKDITL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00461 403 CDD RPA1_DBD_B_like 164 254 - -
Pumo11g00461 403 SUPERFAMILY Nucleic acid-binding proteins 27 136 IPR012340 -
Pumo11g00461 403 Pfam Domain of unknown function DUF223 67 135 IPR003871 -
Pumo11g00461 403 Gene3D - 290 402 IPR012340 -
Pumo11g00461 403 SUPERFAMILY Nucleic acid-binding proteins 297 399 IPR012340 -
Pumo11g00461 403 Gene3D - 28 137 IPR012340 -
Pumo11g00461 403 Gene3D - 138 270 IPR012340 -
Pumo11g00461 403 SUPERFAMILY Nucleic acid-binding proteins 152 271 IPR012340 -
Pumo11g00461 403 CDD RPA1_DBD_A_like 41 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00461 Pumo-Chr11 16739974 16742132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00461 30 397 Core DNA Replication Machinery Family AT5G08020 23.177 1.41e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00461 - - lja:Lj6g3v0884310.1 293.123