Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00460 ATGGTGAAGTTTACAGCCGAGGAGCTTCGGCGCGTTATGGATTTCAAGCACAACATCCGTAACATGTCTGTTATTGCACATGTTGATCATGGAAAATCAACTCTTACGGATTCTCTAGTTGCTGCTGCTGGGATTATTGCACAAGGAGTTGCAGGTGATGTTCGCATGACAGATACCCGTCAGGACGAAGCTGAGCGAGGCATCACAATCAAGTCTACTGGTATCTCACTTTACTATGAAATGTCCGATGATTCTCTCAAGAACTTCAAGGGAGAACGCGACGGGAACGAGTACCTCATCAACCTCATCGACTCTCCCGGGCACGTTGACTTCTCGTCTGAGGTTACAGCTGCTCTGCGCATCACTGACGGGGCCCTTGTGGTAGTAGATTGTGTGGAGGGCGTCTGTGTGCAAACAGAAACAGTTCTCCGTCAGGCTCTCGGCGAAAGGATCCGACCTGTCTTGGCCGTCAATAAGATGGATAGGTGTTTCCTCGAGCTTCAGGTGGACGGAGAAGAAGCTTACCAGACCTTCCAAAGGGTTATTGAGAATGCTAATGTGATTATGGCTACATATGAAGACCCCCTTCTTGGGGATGTGCAGGTCTACCCAGAGAAAGGAACTGTTGCTTTTTCTGCTGGTTTGCATGGCTGGGCTTTCACTCTCACCAACTTTGCTAAAATGTATGCCTCAAAGTTTGGGGTTGATGAGGCAAAGATGATGGAAAGGCTCTGGGGTGAGAATTTCTTTGATTCAGCCACCAAGAAATGGACCAACAAGAATACTGGTTCTTCTACGTGCAAGCGCGGTTTTGTTCAGTTTTGTTATGAGCCTATCCAACAGATAATTGCTTCTTGTATGAATGGTGATGATCAGAAGGATAAGTTGTGGTCTATGCTGCAAAAACTTGGAGTCACCATGAAATCTGAAGAGAAAGACCTGATGGGTAAAGCTCTAATGAAACGCGTCATGCAGTCCTGGCTCCCAGCAAGTAATGCACTTCTGGAAATGATGATATTCCATCTTCCCTCCCCTTCAAAGGCCCAAAAGTATCGTGTAGACAACTTGTACGAGGGTCCCCTTGACGATCAATATGCAAATGCTATTAGGAATTGTGATCCTAATGGACCTTTGATGCTTTATGTATCAAAGATGATTCCTGCATCGGATAAGGGGAGGTTTTTTGCTTTTGGCCGTGTTTTCTCTGGTAAGGTCTCAACTGGTTTGAAGGTAAGAATTATGGGTCCAAATTACGTCCCTGGAGAGAAGCAAGACTTGTATGTCAAGAGTGTGCAAAGGACTGTAATTTGGATGGGGAAAAAGCAAGAAACTGTTGAGGACGTGCCTTGTGGTAACACTGTTGCCATGGTTGGATTGGATCAATTTATCACCAAGAATGCAACATTGGCAAATGAAAAGGAAGTCGATGCACACCCTATTCGAGCTATGAAGTTTTCTGTCTCACCCGTCGTTCGTGTTGCTGTCCAGTGCAAGCTCCCATCGGATCTTCCCAAGCTCGGTGAAGGTCTCAAGCGATTGGCCAAATCCGATCCCATGGTTGTGTATGCTAAACAGGACACTGGAGAATACATTGTTGCTGGTGCTGGAGAACTCCACCTTGAGATCTGTTTGAAGGACTTGCAGGAAGACTTCATGGGCGGAGCCGAGATTATCAAGTCGGATCCTGTCGTGTCCTTCCGCGAGACTGTCACAGAGAGATCTTGCCGCACTGTGATGAGCAAGTCACAGAACAAGCACAATCGTCTGTACATGGAGGCCAGGCCCTTGGAGGGGGGGCTTGTCGAGGCCATTGACGACGGCCGTGTCGGTCCAAGGGACGACCACAGAGTTCGTTCCAAGATTTTGTCCGAAGAATTTGGCTGGGATAAGGATCTTGCGAAGAAAATCTGGTGTTTTGGACCAGAGACCACGGGTCCTAACATGGTGGTTGATACATGTAAAGGCGTCCAATACCTGAATGAAATTAAAGATTCTGTTGTTGCTGGATTTCAGGAGGCTTCAGAAAAAGGTGCATTGGCTGAAGAAAACATGAGGGGAATCTGCTTTGAAGTCTGTGATGCTGTTGACCACGCTGATGCTATTCACAGAAGCGGTCATCAGATCGTTCCAACTGCTAGGAGAGTCTGTTACGCTTCCCAGTTGACTGCAAAGCCTAGGCTTCTTGAGCCTGTTTACCTGGTTGAAATGCAGGCGCCTGAGAAGGCTCTCAGCGGCATCTACAGCGTTCTTAACCAGAGACGTGGCCATGTCTTTGATGAAATGCAGCGGCCCGGTACCCCGTTATACAATGTTAAGGCATACCTCCCTGTCATCGAGTCCTTCGGGTTCTCGAGCTCGTTGAGGGCTGCAACATCAGGACAGGCTTTCCCCCAGTGTGTTTTTGATCACTGGGATATCATGTCATCTGATCCGTTGGAGCCTGGTTCGCAAGCTGCACAGCTTGTTTCGGATATTCGTGACAGGAAAGGATTAAAGCAAATGACACCGCTTTCAGAATACGAGGACAAGCTTTAA 2535 0.4761 MVKFTAEELRRVMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQGVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDDSLKNFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLAVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENFFDSATKKWTNKNTGSSTCKRGFVQFCYEPIQQIIASCMNGDDQKDKLWSMLQKLGVTMKSEEKDLMGKALMKRVMQSWLPASNALLEMMIFHLPSPSKAQKYRVDNLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKQDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLANEKEVDAHPIRAMKFSVSPVVRVAVQCKLPSDLPKLGEGLKRLAKSDPMVVYAKQDTGEYIVAGAGELHLEICLKDLQEDFMGGAEIIKSDPVVSFRETVTERSCRTVMSKSQNKHNRLYMEARPLEGGLVEAIDDGRVGPRDDHRVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDTCKGVQYLNEIKDSVVAGFQEASEKGALAEENMRGICFEVCDAVDHADAIHRSGHQIVPTARRVCYASQLTAKPRLLEPVYLVEMQAPEKALSGIYSVLNQRRGHVFDEMQRPGTPLYNVKAYLPVIESFGFSSSLRAATSGQAFPQCVFDHWDIMSSDPLEPGSQAAQLVSDIRDRKGLKQMTPLSEYEDKL 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00460 844 Pfam Elongation factor Tu domain 2 396 469 IPR004161 GO:0005525
Pumo11g00460 844 FunFam Translation elongation factor 2 725 844 - -
Pumo11g00460 844 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 17 346 IPR000795 GO:0003924|GO:0005525
Pumo11g00460 844 FunFam Translation elongation factor 2 488 565 - -
Pumo11g00460 844 Pfam Elongation factor G C-terminus 726 812 IPR000640 -
Pumo11g00460 844 Gene3D - 3 237 IPR027417 -
Pumo11g00460 844 FunFam Translation elongation factor 2 345 486 - -
Pumo11g00460 844 FunFam Translation elongation factor 2 571 724 - -
Pumo11g00460 844 SMART EFG_IV_2 608 724 IPR005517 GO:0005525
Pumo11g00460 844 SUPERFAMILY EF-G C-terminal domain-like 729 829 IPR035647 -
Pumo11g00460 844 Pfam Elongation Factor G, domain III 489 551 IPR041095 -
Pumo11g00460 844 CDD EF2_II 377 469 - -
Pumo11g00460 844 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 8 843 - -
Pumo11g00460 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 343 IPR027417 -
Pumo11g00460 844 Gene3D - 722 831 - -
Pumo11g00460 844 Gene3D Translation factors 345 486 - -
Pumo11g00460 844 CDD aeEF2_snRNP_like_IV 561 733 - -
Pumo11g00460 844 SUPERFAMILY EF-G C-terminal domain-like 486 562 IPR035647 -
Pumo11g00460 844 FunFam Translation elongation factor 2 3 237 - -
Pumo11g00460 844 Pfam Elongation factor Tu GTP binding domain 17 344 IPR000795 GO:0003924|GO:0005525
Pumo11g00460 844 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 IPR031157 -
Pumo11g00460 844 SUPERFAMILY Ribosomal protein S5 domain 2-like 564 728 IPR020568 -
Pumo11g00460 844 Pfam Elongation factor G, domain IV 612 724 IPR005517 GO:0005525
Pumo11g00460 844 CDD EF2_snRNP_III 489 561 - -
Pumo11g00460 844 SMART EFG_C_a 726 815 IPR000640 -
Pumo11g00460 844 NCBIfam small GTP-binding protein domain 20 176 IPR005225 GO:0005525
Pumo11g00460 844 CDD EF2 20 230 - -
Pumo11g00460 844 Gene3D Elongation Factor G (Translational Gtpase), domain 3 487 565 - -
Pumo11g00460 844 PRINTS GTP-binding elongation factor signature 21 34 IPR000795 GO:0003924|GO:0005525
Pumo11g00460 844 PRINTS GTP-binding elongation factor signature 65 73 IPR000795 GO:0003924|GO:0005525
Pumo11g00460 844 PRINTS GTP-binding elongation factor signature 153 162 IPR000795 GO:0003924|GO:0005525
Pumo11g00460 844 PRINTS GTP-binding elongation factor signature 101 111 IPR000795 GO:0003924|GO:0005525
Pumo11g00460 844 PRINTS GTP-binding elongation factor signature 117 128 IPR000795 GO:0003924|GO:0005525
Pumo11g00460 844 SUPERFAMILY Translation proteins 345 478 IPR009000 -
Pumo11g00460 844 CDD eEF2_snRNP_like_C 729 807 - -
Pumo11g00460 844 Gene3D - 571 721 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00460 Pumo-Chr11 16707919 16710685 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00460 1 844 Eukaryotic Initiation Factors Gene Family AT1G56070 88.047 0.0 1571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00460 K03234 - tcc:18594569 1548.49