Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00427 ATGGGTTCCATTTGGCAACAAATTTCTCCTGACTCTGAGGAAAACAATGCATGCATCTATGCATTGCAGCATTGCTTTGGTCCAATAATATATTCAGCAGTATTGAAGGCTGCCCTTGAACTCAACCTCTTTGAGATCATAGCAAAGGCATATCCACATGGTGTCTCAGCATGTGATGTTGCTTCTCAACTTCCAACACAACACCCTGAATTGCCTCAAAGGCTTGATCGCATGCTGTGTCTACTTGCAAGTCACTCTCTTCTTACTTGTTCCACTCCCACCAATGAAGATGGTAACCCTCAAAGGCTTTACCAGCTATCACTTGCTGGTAAATACTTTGTCAAAGATGAGAATAAGGGCTCTTTAGCTTTCCTCTCAACTTTTCTGAGTCACCAAGCAATCGTGGATGTCTTCCTCAACTTCAAGGAGGTACTTCTGAACTTTGACAAGGGCGTATTCGAGAAAGTTCACGGAGTGCCTATTTATGAAGGCATACAGTCAGATCCGACGTTGAATAAGGTTTTCAATGAAGCAATGGCTAATATAGGCACAATCGAGATGAACAAGTTACTTGAAATATATGGAGGATTTGAAGGAATATCGTTGCTAGTTGATGTGGGTGGTGGCATTGGCCAAAACTTGCATATGATAATCTCCAAGTATCCTTCTATAAAGGGTGTTAATTTTGACCTGCCCCATGTGATACAAAATGCTCCAATTTATCCAGGGATAAAGCAACTTGAAGGAGACATGTTTAAAAGTGTTCCAAAAGGTGATGCCATGATATTGAAGGCTGTGTTGCACAATTGGTCGGATGAGAAATGTATACAAATTTTAAGGAATTGCTACAAAGCTTTGCCAGAAAATGGGAAGGTAATCGTTGTGGAAATCATAATGCCTGAAGCAATTCACTCAACAGAAGCAGATAAAATGGTAACTGGCTTTGACAACCTCATGTTTCTGGATGGTGGGATCGAAAGAACAGAGAAAGAATTTGAGAATTTATGCAAACGCTCAGGATTTTCTGATTTTGAAGTTGCTGGTCGTGTCTTATCTGCTCTAGGAGTCATAGAATTTCGCAAGTGA 1086 0.407 MGSIWQQISPDSEENNACIYALQHCFGPIIYSAVLKAALELNLFEIIAKAYPHGVSACDVASQLPTQHPELPQRLDRMLCLLASHSLLTCSTPTNEDGNPQRLYQLSLAGKYFVKDENKGSLAFLSTFLSHQAIVDVFLNFKEVLLNFDKGVFEKVHGVPIYEGIQSDPTLNKVFNEAMANIGTIEMNKLLEIYGGFEGISLLVDVGGGIGQNLHMIISKYPSIKGVNFDLPHVIQNAPIYPGIKQLEGDMFKSVPKGDAMILKAVLHNWSDEKCIQILRNCYKALPENGKVIVVEIIMPEAIHSTEADKMVTGFDNLMFLDGGIERTEKEFENLCKRSGFSDFEVAGRVLSALGVIEFRK 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00427 361 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 121 347 IPR029063 -
Pumo11g00427 361 Pfam Dimerisation domain 34 83 IPR012967 GO:0046983
Pumo11g00427 361 PIRSF O-mtase 4 361 IPR016461 GO:0008168
Pumo11g00427 361 FunFam Caffeic acid 3-O-methyltransferase 3 113 - -
Pumo11g00427 361 Gene3D - 30 190 IPR036388 -
Pumo11g00427 361 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 361 IPR016461 GO:0008168
Pumo11g00427 361 Pfam O-methyltransferase domain 151 342 IPR001077 GO:0008171
Pumo11g00427 361 PANTHER O-METHYLTRANSFERASE 31 341 IPR016461 GO:0008168
Pumo11g00427 361 Gene3D Vaccinia Virus protein VP39 172 347 IPR029063 -
Pumo11g00427 361 SUPERFAMILY "Winged helix" DNA-binding domain 12 117 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00427 Pumo-Chr11 15347364 15349459 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00427 1 356 Monolignol Biosynthesis Gene Families AT5G54160 46.685 2.23e-102 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00427 - - gmx:100784030 513.842