Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00425 ATGGGTTCTAATTATACAGAGGAAAATAATGCATGCTTGTCTGCAATTCAGCATTGCTTTGGTCCAATAGTAATTTCTACAGTATTGAAGGCTGCCCTAGAACTCAACTTGTTTGAGATCATAGCAAAGGCATCACCACTTGGTGTCTCAGCATGTGATGTTGCTTCTCAACTTCCAACACAACACCCTGAATTGCCTCAAAGGCTTGATCGCATGCTGTCTCTACTAGCAAGTTACTCTCTTCTTACTTGTTCCACTCGCACCAATGAAGATGGTAACCCTGAAAGGCTTTACCAGCTATCACTTGCTGGTAGATACTTTGTCAAAGATGAGAATAAGGGCTCTTTAGCTTTCCTACCAAATTTTCTGAGTCACCGAGCAATCAAGGATGTCTTGTAA 399 0.416 MGSNYTEENNACLSAIQHCFGPIVISTVLKAALELNLFEIIAKASPLGVSACDVASQLPTQHPELPQRLDRMLSLLASYSLLTCSTRTNEDGNPERLYQLSLAGRYFVKDENKGSLAFLPNFLSHRAIKDVL 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00425 132 SUPERFAMILY "Winged helix" DNA-binding domain 7 111 IPR036390 -
Pumo11g00425 132 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 132 IPR016461 GO:0008168
Pumo11g00425 132 FunFam Caffeic acid 3-O-methyltransferase 1 107 - -
Pumo11g00425 132 PANTHER O-METHYLTRANSFERASE 23 117 IPR016461 GO:0008168
Pumo11g00425 132 Pfam Dimerisation domain 28 77 IPR012967 GO:0046983
Pumo11g00425 132 Gene3D - 1 107 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00425 Pumo-Chr11 15341355 15341753 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00425 24 119 Monolignol Biosynthesis Gene Families AT5G54160 48.454 2.72e-20 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00425 - - gmx:100784030 162.925