Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00408 ATGGACTCAGGGGCTGTTTCTGGATTTGAGCTCATGACCAACTGGTCACCAAGGCGCAACTTTATCACTGTGCCAGGTTCACCATACCAGTGGCTGAGGGAGCTGAGATGGGACTCCCAGGGCTTAAATCCAATAAGCCTTCTTATTGATTGTGCCAAATGTGTTGCATCTGGAAGCATCAAGAATGCAGATATTGGCCTTGAGTACATATCTCAGATTTCATCTCCTGATGGTAATGCAGTGCAAAGGATGGTCACTTATTTCAGTGAAGCACTTGGTTACAGGATAATAAAAAATTTGCCAGGTGTATATAAGTCTCTCAATCCATCAAAAACATCACCGTCTTCAGAAGATATCCTTGTTCAGAAATACTTCTATGAACTGTGTCCTTTTTTAAAATTCTCATACCTGATCACAAACCAAGCCATTGTGGAGGCCATGGAATTTGAAAAGGTGGTTCACATTATTGATCTCAATTGTTGTGAGCCTGCTCAATGGATAGATCTTCTACTAACTTTTAAACACCGTCAGGGGAGGTCCACCCCATCTGAAAATTACAGGCATTCATGA 570 0.4193 MDSGAVSGFELMTNWSPRRNFITVPGSPYQWLRELRWDSQGLNPISLLIDCAKCVASGSIKNADIGLEYISQISSPDGNAVQRMVTYFSEALGYRIIKNLPGVYKSLNPSKTSPSSEDILVQKYFYELCPFLKFSYLITNQAIVEAMEFEKVVHIIDLNCCEPAQWIDLLLTFKHRQGRSTPSENYRHS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00408 189 ProSiteProfiles GRAS family profile. 35 189 IPR005202 -
Pumo11g00408 189 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 40 182 IPR005202 -
Pumo11g00408 189 Pfam GRAS domain family 45 179 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00408 Pumo-Chr11 14977438 14979268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00408 3 176 GRAS Transcription Factor Family AT1G50420 47.159 1.07e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo11g00408 GRAS 5.3e-40 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00408 - - gmx:106798410 293.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g00408 11 14977438 14979268 Pumo11g00408 11 14977438 14979268 ECH