Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00388 ATGTCAACACACGCGGTACTTATCTTCACTTCTATATATGTTTTCACGCGATCTGAACTGAATTGCTTCTATCACTTGAAGATGAGGACCACTTGCTCTAAATTTCTCCTCCTTTCGCTCCTTGCATTTTGCTTCGCATCACTTGTTTGTGAAGCCACTACTCTGCTGCTGGCACCTGATGAAGGGCTAGCTCTGAAGGATATTGCTAAAACACTTGGTAAGAAGGAATGGAACTTCGATATTAATCCATGTAGTGGAGAGTCTCCCTGGGTTACACAGAATGCCACAAAAGAAGAATTAAACAGTGTATCCTGCATTTGCTCCATTCCCAACGACAACTTCTGCCACGTTATTAGCATAGTTTTGAAATGTCAAAGTCTTCAAGGTCGTCTCCCACCGGAGTTGAACAGGTTGCCATACCTTCAAGAAATTGACCTCACCCGCAATTACCTTAACGGAACAATACCTAAAGAGTGGGGCTCCTTGAAACTTGTCAACATTTCACTTCTTGGAAATCGATTAAGCGGTCCAATCCCAATAGAGCTGGCAAACATTACCACTCTAAAAAAATTAGACCTGGTGTGCAATCAAATATCTGGAAATCTTTCTCATCTTGGGAACCTTTCGAACCTTGAAAAGTTGCATCTAAGCTCCAACAACTTTACTGGAGAGTTGCCTGAAACACTTTCTAGGCTTACTAAATTGAAGGAAGTCCGACTTAGTGACAATCAATTCTCTGGAAAGATTCCCGATTTTATTCAAAGATGGACAAATCTTAGTTCATTAGTAATTCAAGGTAGTGGTTTAAGTGGACCAATTCCTTCTGGAATTTCAGTTCTGCACAACCTAAAAGATTTAATAATTTCTGACTTGAACGGACCTGATTCCACTTTCCCTCGACTTGATAATATGATAAAATTGGAAACATTGATATTAAGGAGTTGTAATATTAATGACACATTATTACCTCATATATATCTTGCAAACCTGACTGGGTTGAAAATCTTGGACCTCGGCTTCAACAAATTAAGTGGAGAAATTCCAAAAAACTTGGTTTTAGGACCAATAATGGAGCAAATATATTTAACTAAAAACTTCTTCACTGGACCGGTGCCCTATTGGATAAAGAGAGTTATACCCATAGATCTTTCATATAACAACTTCAGCGTTGAAAACTCAGAGCTAGAGAATTGTCGAGAGGGAAATATAGGACTTATTGCTTGTGTGAAAAGTACTAGCTGCACTAAAACTGTTAGCTCTCTCTATATAAATTGTGGTGGAGATTCAGTAACCATTGGAGACAAAACATACGAAAAAGATACAAATTCTGCTGGACCAGCAGGTTTTGTTGAAGGTGAAAATTATTGGGGATTTGGTAACACCGGTCACTTTCTGGACAATAAAACTGGAGAACATTCCCAAATAACTCAAATTCAAACTACACTTTATATGGATGATACCGAACTATATAAGAATGCACGTATTTCCCCCATTTCTTTAACTTATTATGGATTTTGCTTGGAGAATGGAAACTACAAAGTAAAGCTCCACTTTGCAGAGATAATGTTTACTGATGACAACACATTTAGAAGCATTGGGAGGCGAGTATTTGACATTTACATTCAGGGAAAGCTGGTAAGGAAGGATTTCAATATTGCAAAAGAAGCACAAGGAGTTAATAAGGAAATTATAAAACAATTTGATGTTCATGTGAGTAGTAACGACTTAGAGATCCAATTCTATTGGGCTGGAAAAGGGACAACTAGTATTCCAAATAAATCGGTATATGGTCCTCTTATATCAGCTATATCTATTGAAAAAGAATCCACACGTAGCTTACCTAAAGGTGTTGTGATTTCAATTGTGGTTACAACAATTATTATCATTATCTTAAGTATTGTTGGCATACTTTGGTGGAGAGGTTGCTTAGGAACAAAAGCTTCATTAGCAAAAGAGCTAAAGGGTTTAAACCTGCAAACTGGTTTATTTACCTTACGTCAAATCAAAGCAGCAACAAATAACTTTGATATTTCTAATAAAATTGGAGAAGGGGGATTTGGCCCTGTTTATAAGGGTGTTTTGTCAAATGGCACAATAATAGCAGTCAAACAACACTCATCTAAGTCCAAGCAAGGGAATCGTGAATTCATAAATGAGATAGGCATGATCTCAGCTTTGCAAAACACTTATCTTGTTAAACTCTATGGTTGTTGTGTTGAAGGAGATCAATTATTGCTGGTATATGAATATATGGAAAACAATAGCCTTGCGTATTCTTTATTTGGCCCAGAAGATTGTCCTATACAATTGAATTGGCCAACTAGGTACAAGATTTGTGTTGGCATTGCTAGAGGTTTGTCTTTCCTTCATGAAGAATCAAGACTAAAAATTGTTCATAGGGACATCAAGGCCACTAATGTGTTGCTTGACAAAGACTTGAATCCAAAGATATCTGATTTCGGCTTGGCTAAGCTTGATGAAGAGGATAGTACTCATATAAGCACTAGAATTGCAGGAACCTATGGTTATATGGCTCCAGAATATGCAATGCATGGCTATTTGACTGACAAAGCAGATGTTTATAGCTTTGGCATTGTTGCCTTGGAAATTGTTAGTGGGAAAAGCAACACTATTCAACGGGCTAAGGATCAAGCATTTTTTCTTCTTAATTGGGCACATCTATTGAAAGAGAAAGGTAACCTATTGGAGTTAGTTGATCCAAGGTTGGGTTTAGATTTCAACAAAGAAGAGGTTATGGTGATGATCAATGTAGCTCTCCTATGCACCAATGTTGTTTCAACTAATAGGCCAACCATGTCTTCCGTGGTGAGTATGCTTGAAGGTAGAATTGTGGTTCCAGAGTTTGTTTTAGACCCAAATGAGGTTATGGATCATCAAAAGAAATTGGAGGAAATGCAACAATGTTACTCTAAAGTACAAGAAAATAAGATGAGTGAGACACAAGGACAAAGCTCTTCAATTGATGGACATGGACCATGGATTTCTTCACCTTCATCAACTTCAGACCTTTATCCCATTAAGCTAGATTCTTCATATTGGGAGAAAAGAAGTTAA 3075 0.3743 MSTHAVLIFTSIYVFTRSELNCFYHLKMRTTCSKFLLLSLLAFCFASLVCEATTLLLAPDEGLALKDIAKTLGKKEWNFDINPCSGESPWVTQNATKEELNSVSCICSIPNDNFCHVISIVLKCQSLQGRLPPELNRLPYLQEIDLTRNYLNGTIPKEWGSLKLVNISLLGNRLSGPIPIELANITTLKKLDLVCNQISGNLSHLGNLSNLEKLHLSSNNFTGELPETLSRLTKLKEVRLSDNQFSGKIPDFIQRWTNLSSLVIQGSGLSGPIPSGISVLHNLKDLIISDLNGPDSTFPRLDNMIKLETLILRSCNINDTLLPHIYLANLTGLKILDLGFNKLSGEIPKNLVLGPIMEQIYLTKNFFTGPVPYWIKRVIPIDLSYNNFSVENSELENCREGNIGLIACVKSTSCTKTVSSLYINCGGDSVTIGDKTYEKDTNSAGPAGFVEGENYWGFGNTGHFLDNKTGEHSQITQIQTTLYMDDTELYKNARISPISLTYYGFCLENGNYKVKLHFAEIMFTDDNTFRSIGRRVFDIYIQGKLVRKDFNIAKEAQGVNKEIIKQFDVHVSSNDLEIQFYWAGKGTTSIPNKSVYGPLISAISIEKESTRSLPKGVVISIVVTTIIIIILSIVGILWWRGCLGTKASLAKELKGLNLQTGLFTLRQIKAATNNFDISNKIGEGGFGPVYKGVLSNGTIIAVKQHSSKSKQGNREFINEIGMISALQNTYLVKLYGCCVEGDQLLLVYEYMENNSLAYSLFGPEDCPIQLNWPTRYKICVGIARGLSFLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEDSTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNTIQRAKDQAFFLLNWAHLLKEKGNLLELVDPRLGLDFNKEEVMVMINVALLCTNVVSTNRPTMSSVVSMLEGRIVVPEFVLDPNEVMDHQKKLEEMQQCYSKVQENKMSETQGQSSSIDGHGPWISSPSSTSDLYPIKLDSSYWEKRS 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00388 1024 SUPERFAMILY L domain-like 101 374 - -
Pumo11g00388 1024 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 226 292 - -
Pumo11g00388 1024 Gene3D Ribonuclease Inhibitor 64 187 IPR032675 -
Pumo11g00388 1024 Gene3D Ribonuclease Inhibitor 188 253 IPR032675 -
Pumo11g00388 1024 Pfam Leucine Rich repeat 186 200 IPR001611 GO:0005515
Pumo11g00388 1024 MobiDBLite consensus disorder prediction 981 1013 - -
Pumo11g00388 1024 ProSiteProfiles Leucine-rich repeat profile. 187 209 IPR001611 GO:0005515
Pumo11g00388 1024 SMART serkin_6 675 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00388 1024 Coils Coil 962 982 - -
Pumo11g00388 1024 Gene3D Phosphorylase Kinase; domain 1 644 750 - -
Pumo11g00388 1024 Gene3D Ribonuclease Inhibitor 254 404 IPR032675 -
Pumo11g00388 1024 Pfam Protein tyrosine and serine/threonine kinase 677 945 IPR001245 GO:0004672|GO:0006468
Pumo11g00388 1024 FunFam Putative LRR receptor-like serine/threonine-protein kinase 751 958 - -
Pumo11g00388 1024 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 43 978 - -
Pumo11g00388 1024 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 63 225 - -
Pumo11g00388 1024 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 418 608 - -
Pumo11g00388 1024 Pfam Malectin domain 421 603 IPR021720 -
Pumo11g00388 1024 CDD STKc_IRAK 681 948 - -
Pumo11g00388 1024 MobiDBLite consensus disorder prediction 981 1024 - -
Pumo11g00388 1024 Gene3D Transferase(Phosphotransferase) domain 1 751 952 - -
Pumo11g00388 1024 Gene3D - 419 610 - -
Pumo11g00388 1024 SUPERFAMILY Protein kinase-like (PK-like) 659 963 IPR011009 -
Pumo11g00388 1024 ProSiteProfiles Protein kinase domain profile. 675 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00388 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 797 809 IPR008271 GO:0004672|GO:0006468
Pumo11g00388 1024 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 644 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00388 Pumo-Chr11 14374754 14414645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00388 48 972 Receptor kinase-like Gene Family AT1G53420 56.009 0.0 987
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo11g00388 PK_Tyr_Ser-Thr 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00388 - - gmx:100785451 1187.56