Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00385 ATGGGTCGAGGGAAGATCGAAATCAAGAGAATCGACAATGCTAGCAGCAGACAAGTCACGTTCTCGAAGCGGAGAACCGGGTTGTTCAAGAAGGCTCAGGAACTTTCCATTCTCTGTGATGCCGAGGTTGCCGTCATAGTTTTCTCCAACACTGGCAAGCTCTTCGAGTTTTCCAGTTCCGGTATGAAGCAAACACTTTCAAGATACAACAAATGCCTTGGTTCTACAGATGCTTCTGTAGCAGAAATTAAGACACAGAAGGAAGATTCTAAGATGGTGGAGATTCTAAGAGAGGAAATTGCAAAGCTAGAAACAAAGCAATTACAGTTATTGGGTAAGGATCTGACAGGATTGGGTTTAAAGGAATTGCAAAATTTAGAGCAGCAACTTAATGAGGGTTTATTGTCTGTCAAGGGAAGAAAGGAGGAAATACTCATGGAGCAACTGGAGCAATCTAAAGTTCAGGAACAGCGGGTTATGTTAGAGAATGAAACTTTGCGCAGACAGGCAAATATCATTCACTTGCTGTTCTTAATGTGCAATATTGAGGAGCTTCGTTGTCTGTTTCCGCAATCAGAACGTGTGGTCCCATTCCAATACCAACATACTGAAAGAAAGAATACTTTTGTAAATACTAGTGCCAGATGTCTCAACTTGGCCAATAACTGTGGAAATGAGAAAGGGAGTTCAGACACAGCATTTCATTTGGGGTTGCCTGCTGGTGTTCAAGAGGAAGGCCCCCAAGAAAGAAACCTTTTCAAATGA 765 0.4235 MGRGKIEIKRIDNASSRQVTFSKRRTGLFKKAQELSILCDAEVAVIVFSNTGKLFEFSSSGMKQTLSRYNKCLGSTDASVAEIKTQKEDSKMVEILREEIAKLETKQLQLLGKDLTGLGLKELQNLEQQLNEGLLSVKGRKEEILMEQLEQSKVQEQRVMLENETLRRQANIIHLLFLMCNIEELRCLFPQSERVVPFQYQHTERKNTFVNTSARCLNLANNCGNEKGSSDTAFHLGLPAGVQEEGPQERNLFK 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00385 254 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo11g00385 254 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Pumo11g00385 254 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo11g00385 254 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo11g00385 254 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo11g00385 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Pumo11g00385 254 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Pumo11g00385 254 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo11g00385 254 Pfam K-box region 85 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo11g00385 254 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Pumo11g00385 254 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo11g00385 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo11g00385 254 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Pumo11g00385 254 Coils Coil 86 113 - -
Pumo11g00385 254 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00385 Pumo-Chr11 14312745 14318248 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00385 1 244 MADS-box Gene Family AT5G13790 52.439 7.34e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo11g00385 K-box 3.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00385 - - gmx:547732 414.846