Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00378 ATGGCAATGATAAAAGAGAATATTGAAGTGAGCCTTGGGAGGAGCCAGATGTCCATGGCAGAAGCAGCAAGCAGTGGCGATGATAACCACCAGCAGCAGTTACCACAACAAGAAGTTGGTGAAAATACTACAATCAACACTACAAAGAGAAGCTCAAGATTTCGCACCGTTAGCAGACATAGATGGACTGGTCGGCATGAAGCTCACTTGTGGGACAAACTCTCTTGGAACGTAACACAAAAGAAGAAAGGGAAGCAAGGGGCTTATGATGAGGAAGAATCTGCTGCCACAGCATATGATTTAGCTGCACTTAAGTATTGGGGAACTTCAACTTTCACCAATTTTCCAGTAAGATGA 357 0.4398 MAMIKENIEVSLGRSQMSMAEAASSGDDNHQQQLPQQEVGENTTINTTKRSSRFRTVSRHRWTGRHEAHLWDKLSWNVTQKKKGKQGAYDEEESAATAYDLAALKYWGTSTFTNFPVR 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00378 118 SUPERFAMILY DNA-binding domain 53 117 IPR016177 GO:0003677
Pumo11g00378 118 CDD AP2 52 117 IPR001471 GO:0003700|GO:0006355
Pumo11g00378 118 ProSiteProfiles AP2/ERF domain profile. 53 116 IPR001471 GO:0003700|GO:0006355
Pumo11g00378 118 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 30 117 - -
Pumo11g00378 118 MobiDBLite consensus disorder prediction 15 52 - -
Pumo11g00378 118 SMART rav1_2 53 118 IPR001471 GO:0003700|GO:0006355
Pumo11g00378 118 Pfam AP2 domain 53 108 IPR001471 GO:0003700|GO:0006355
Pumo11g00378 118 MobiDBLite consensus disorder prediction 15 58 - -
Pumo11g00378 118 Gene3D AP2/ERF domain 52 118 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00378 Pumo-Chr11 14185062 14185833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00378 49 117 AP2-EREBP Transcription Factor Family AT1G51190 62.500 3.81e-25 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo11g00378 AP2 1.7e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00378 - - gmx:100792612 206.068