Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00355 ATGGCACTAGAGGCTGTTGTTTTCCCGCAGGATCCATTTGCATATGGTTGCAGCAAGGATTATTTGTACTCCTTAGTAGGAGTACAAACACCCAACTACGGTGGCAATTTCCAAGCAGCGGAAGAAGAGAAATTCCTCCTAGGAATCATCAACAACAACATAGAACACAACCTTCATGCAAACTGGGATTCTTCTTCTACATCGGTGATGCAAAATGTTAAGGAACAATGGGATTCCCACTCCTCCTCCCCTGAAGCCTGCACCGTTGATCAATCCATGACCGCACCTTTCCCTCCTCCTTCTTCCTCCGTGGAAGCCGCCACCACCACGAGTCGCCGTAAACGACGTCGCACCAAGAGCGCCAAGAACAAGGAGGAAATCGAGAACCAGAGGATGACCCACATTGCAGTTGAACGCAATCGCCGAAAACAGATGAATGAGTACTTGGCTGTGCTCCGATCCTTGATGCCTTCTTCTTATGTTCAAAGGGGTGATCAAGCGTCTATTATTGGAGGGGCGATTAACTTTGTGAAGGAGCTGGAGCAGCTTTTGCAGTCGATGGAGGGTCAAAAGAGAACGAACCAACCGCAAGAGAATGTTGGGTTGAATGGGTCGACAGCACCCTTTGCTGAGTTCTTCACGTTTCCTCAATACACGACACGTGGCACGACCATGGCACAGAACCAGGAGCAGAAGCAGTGGGCCGTGGCAGACATTGAAGTGACCATGGTGGATAGCCATGCCAATCTAAAGATACTCTCAAAGAAACAACCTTGCCAGCTTATGAAGATCGTTGTTGGGCTTCAAAGTCTCAGGCTCAGCATTCTCCACCTTAATGTTTCCACTCTCGACGATATGGTCCTTTACTCAATTAGCGTCAAGGTAGAGGACGGGTGTCAGCTGAACACGGTCGATGAAATTGCGGCTGCAGTGAATCAACTATTACGCACAATTCAAGAAGTTACTTTCAACTGA 975 0.4831 MALEAVVFPQDPFAYGCSKDYLYSLVGVQTPNYGGNFQAAEEEKFLLGIINNNIEHNLHANWDSSSTSVMQNVKEQWDSHSSSPEACTVDQSMTAPFPPPSSSVEAATTTSRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMEGQKRTNQPQENVGLNGSTAPFAEFFTFPQYTTRGTTMAQNQEQKQWAVADIEVTMVDSHANLKILSKKQPCQLMKIVVGLQSLRLSILHLNVSTLDDMVLYSISVKVEDGCQLNTVDEIAAAVNQLLRTIQEVTFN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00355 324 PANTHER MAX DIMERIZATION, MAD 68 320 - -
Pumo11g00355 324 MobiDBLite consensus disorder prediction 80 108 - -
Pumo11g00355 324 Gene3D - 109 197 IPR036638 GO:0046983
Pumo11g00355 324 FunFam Basic helix-loop-helix transcription factor 120 195 - -
Pumo11g00355 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 196 IPR036638 GO:0046983
Pumo11g00355 324 Pfam Helix-loop-helix DNA-binding domain 130 181 IPR011598 GO:0046983
Pumo11g00355 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 180 IPR011598 GO:0046983
Pumo11g00355 324 CDD bHLH_AtFAMA_like 132 195 - -
Pumo11g00355 324 SMART finulus 135 186 IPR011598 GO:0046983
Pumo11g00355 324 MobiDBLite consensus disorder prediction 80 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00355 Pumo-Chr11 13006759 13008568 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00355 1 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 52.229 9.04e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo11g00355 HLH 4.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00355 - - gmx:100789380 537.724