Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00354 ATGACCACTCTCACACACTCCAATTTCCACCATGGCCTTTCCTCTATTTTTCTTTTCCTTTTCTATTTTTTTCTCCTCACAGAATTTCCACCGCCGGCCGCCGCGCAGCTACCGAACACGCTGACGCCGCCGCCGCAGCCGCAGGACCGGTTTTCGCGGCTGAAGTTCGACAAATCCATGGCCATCGTTCTGGTGATCCTGGTCGCGGTGTTCTTCATCCTAGGGTTCCTCTCCGTGTACACGCGCCAGTGCGCGGAGCGAAGGATGCGAGGGAGGTTCGACCTCTCGATCTCGATTGCGCGGCGGCAACGCGGTCTGGACCGGGAAATCATCGAGACGTTCCCGACGTTCGTGTACTCCACGGTGAAGAGCCTCAAGATAGGGCGCGCCACGCTAGAATGCGCCGTGTGCCTGAACGAGTTCGAGGAGGACGAAACGCTGCGTTTGATCCCCAAGTGCAGCCACGTGTTCCACCCCGAGTGCATCGACGCGTGGCTCGCCAATCACTCCACTTGCCCCGTGTGCCGGGCCAACCTCGTTCCTAAACCCGATGACCCGTCTTTTGTCCCCATCCAAATCCCGGATCCGGAACAACCCGTTTTAACCTCACCGACCCGACCCGAAACTGTGGATTCTCATCCTCATTCTCCGAAGGTTAATAATAATGATGATTTGATTAATCAGATTCAGAACCGTACGCTTACGCAGCGGTCAAGGTCAACGGGTTTTAGAATCGCGAGTTGGTTTCCGCGGTCTCACTCGACGGGACACTCGCTGGTTCAACCCGGGGAGAATTGTGAGCGGTTTACTCTGCGTTTGCCCGAGGAAGTGCGGAACCAGCTTATGCTGAGTCGCACCAAGAGTTGCGGCGTGAGCGTGACGTTCACGCGCGAGAATAGTGAGAGGAGGGGTTATAGAACAAGGAGCGTTGGTAGCAGCCTCAGCCCTCACGTGAGGGGTTACGGGACAAGGAGCGTGGATGGCACTAGCAGCAGCAGCAGCAGCTCGCACGTGAGGGGGTGGTTTTCTGGTACCCGCTCAGTGAAGGAATCGATTAAGGATGATGTCGGGGAACGATCTTCGAATCGGCTATTCTCGAGGACGACAAGGGAAAATGAGGTTTAG 1125 0.5627 MTTLTHSNFHHGLSSIFLFLFYFFLLTEFPPPAAAQLPNTLTPPPQPQDRFSRLKFDKSMAIVLVILVAVFFILGFLSVYTRQCAERRMRGRFDLSISIARRQRGLDREIIETFPTFVYSTVKSLKIGRATLECAVCLNEFEEDETLRLIPKCSHVFHPECIDAWLANHSTCPVCRANLVPKPDDPSFVPIQIPDPEQPVLTSPTRPETVDSHPHSPKVNNNDDLINQIQNRTLTQRSRSTGFRIASWFPRSHSTGHSLVQPGENCERFTLRLPEEVRNQLMLSRTKSCGVSVTFTRENSERRGYRTRSVGSSLSPHVRGYGTRSVDGTSSSSSSSHVRGWFSGTRSVKESIKDDVGERSSNRLFSRTTRENEV 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00354 374 PANTHER RING FINGER DOMAIN-CONTAINING 39 185 - -
Pumo11g00354 374 MobiDBLite consensus disorder prediction 302 374 - -
Pumo11g00354 374 FunFam E3 ubiquitin-protein ligase ATL6 95 182 - -
Pumo11g00354 374 Pfam Ring finger domain 133 176 IPR001841 -
Pumo11g00354 374 CDD RING-H2_EL5-like 133 176 - -
Pumo11g00354 374 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Pumo11g00354 374 MobiDBLite consensus disorder prediction 348 374 - -
Pumo11g00354 374 MobiDBLite consensus disorder prediction 195 223 - -
Pumo11g00354 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 181 IPR013083 -
Pumo11g00354 374 MobiDBLite consensus disorder prediction 198 223 - -
Pumo11g00354 374 SUPERFAMILY RING/U-box 128 184 - -
Pumo11g00354 374 MobiDBLite consensus disorder prediction 306 342 - -
Pumo11g00354 374 SMART ring_2 134 175 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00354 Pumo-Chr11 12982260 12984166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00354 7 304 Rapid Response to Elicitors AT3G05200 38.199 1.06e-65 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00354 K10664 - gmx:100805815 521.161