Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00340 ATGCAGGAGAAGATGGTAGATATTGAGTTTTTATCAGCAGTGGTGAAGTCACTGACAAGAGATTCAGAAGAGAGGAAGGAAGCAGTGGGGCTGTTGCTAGACCTTTCTGACATTCAGGCAGTTCGACGGCGAATTGGAAGAATTCAAGGGTGCATTGTTATGTTAGTTGCTATACTTAATGGGGATGACCCTGATGCCTCACATGACGCGGCAAAGTTATTGGATATGTTGTCTAGTAATACTCAAAATGCACTTCATATGGCCGAGGCTGGCTACTTTAGGCCACTGGTACAGTATTTGAAAGAAGGGTCTGACATGAACAAGATCCTAATGGCGACAGCACTTTCTAGGTTGGAGCTCACTGATCATAGCAAACTTTCCCTTGGAGAAGCTGGGGCAATTGAGCCCCTTGTCAATATGTTTAGTACTGGGAAACTCGAGTCCAAGTTATCAGCTCTAAATGCACTGCAAAATCTGTCTACCATGACAGAAAATGTGCAACACTTGATCAGATCCGGAATTGCAGGATCTCTGCTACAACTTCTTTTCTCAGTAACATCTGTGCTCATGACTTTGCGTGAGCCTGCATCAGCTATTCTTGCTAGAATTGCTCAGTCAGAATCCATCCTTGTTAATGGAGATGTGGCTCAACAGATGCTTTCACTTTTGAATCTTTCTAGCCCTATAATTCAAGGTCATCTATTAGAAGCTCTAAATAACATAGCCTCCCATCCTGGTGCATCCAAAGTGAGAGGCAAAATGAAGGAAAAAGGTGCACTTCAGCTGCTCTTGCCCTTTCTGAAGGAAAACACCACCAAAGTCAGGAGTAAGGTCTTGCAATTGCTGTACACTCTCTCTAAAGATCTAACAGATGAGTTGACTGAGCATCTTGATGAAACTCATCTTTTCAACATTGTTGATATAGTCTCAACACCAACATTAGATAGTGAAAAGGCTGCAGCTGTTGGCATACTGAGTAATCTTCCTGCTAGTAATAAAAAAGTGACAGATATACTGAAGAGGGCAAATTTGCTGCCCATTTTAATATCCCTTATGTATTCTAGCACAGGAAGTAATTCATCCACAACAAATAGCTTCTTAGCAGAGAGTATTGCAACTGTTATTATTCGCTTCACAATTTCCTCTGACAAGAAACTACAACTTCTTTCAGCCGAACAAGGGGTGATTCCTTTGCTTGTAAAACAGCTCTCAATTGGTTCACCAATCACAAAATCAAGGGCTGCAATCTCTCTGGCTCAACTATCGCAGAATTCTCTGTCTCTTAGGAAGACTAGAAAGTCAAGGTGGTCATGTGTTCCGCCATCGGTGAATGCATATTGCGAAGTTCATGATGGATATTGCTTTGTCAACAGCACATTTTGTTTGGTCAAGGCAGGTGCTGTTTCTCCCCTTATCCAATTATTGGAAGATACTGAGAGAGAAGTAGTTGAAGCTGCTTTGCATGCCCTCTCAACTCTTTTGCAAGATGAAATCTGGGAAGGTGGTGTCAATTCCGTTGCCAAGTTGTCAGGTGTGCAGGCTATTATAAAATGTCTACAAGTTGAGGATGCAAAGGTTCAAGAAAAAGCAATATGGATGTTGGAGAGAATATTCAAGGTTGCAGAACATAGAGTAAAATATGGAGAATCTGCTCAGGTGGTTCTTATTGATCTTGCCCAGAAAAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTATTAGCTGAGCTAGAGCTCTTGCAATCTCAATCAAGTTATTTTTGA 1764 0.415 MQEKMVDIEFLSAVVKSLTRDSEERKEAVGLLLDLSDIQAVRRRIGRIQGCIVMLVAILNGDDPDASHDAAKLLDMLSSNTQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELTDHSKLSLGEAGAIEPLVNMFSTGKLESKLSALNALQNLSTMTENVQHLIRSGIAGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNGDVAQQMLSLLNLSSPIIQGHLLEALNNIASHPGASKVRGKMKEKGALQLLLPFLKENTTKVRSKVLQLLYTLSKDLTDELTEHLDETHLFNIVDIVSTPTLDSEKAAAVGILSNLPASNKKVTDILKRANLLPILISLMYSSTGSNSSTTNSFLAESIATVIIRFTISSDKKLQLLSAEQGVIPLLVKQLSIGSPITKSRAAISLAQLSQNSLSLRKTRKSRWSCVPPSVNAYCEVHDGYCFVNSTFCLVKAGAVSPLIQLLEDTEREVVEAALHALSTLLQDEIWEGGVNSVAKLSGVQAIIKCLQVEDAKVQEKAIWMLERIFKVAEHRVKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQSQSSYF 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00340 587 SMART arm_5 247 287 IPR000225 GO:0005515
Pumo11g00340 587 SMART arm_5 455 495 IPR000225 GO:0005515
Pumo11g00340 587 SMART arm_5 121 161 IPR000225 GO:0005515
Pumo11g00340 587 SMART arm_5 499 539 IPR000225 GO:0005515
Pumo11g00340 587 SMART arm_5 383 423 IPR000225 GO:0005515
Pumo11g00340 587 SMART arm_5 80 120 IPR000225 GO:0005515
Pumo11g00340 587 Pfam Armadillo/beta-catenin-like repeat 461 493 IPR000225 GO:0005515
Pumo11g00340 587 Gene3D - 453 585 IPR011989 -
Pumo11g00340 587 Gene3D - 119 434 IPR011989 -
Pumo11g00340 587 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 493 IPR000225 GO:0005515
Pumo11g00340 587 Gene3D - 2 118 IPR011989 -
Pumo11g00340 587 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 132 174 IPR000225 GO:0005515
Pumo11g00340 587 SUPERFAMILY ARM repeat 3 160 IPR016024 -
Pumo11g00340 587 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 587 - -
Pumo11g00340 587 SUPERFAMILY ARM repeat 111 541 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00340 Pumo-Chr11 12413356 12416070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00340 14 587 U-box Gene Family AT1G76390 29.402 1.99e-47 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00340 K08332 - gmx:100791453 1012.29