Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00321 ATGGCGGAACCTCGCCCCCCTAAGCGCCCCAAAATCACTAGTTGCTTGATGATTCTCAAACTTTGTTTCAGGGGGGACGATGATTATATGCCAGGAAATATTCTTGAGATCGAGCTTTGTAATTTCATGACCTTTGATTACTTAAAATGCAAACCCGGGCCTCGATTGAATCTTGTAATTGGGCCTAATGGTTCTGGTAAGAGTTCGCTTGTATGTGCTATTGCTCTTGGCCTCTGTGGAGAGCCCCAGTTGCTTGGGCGTGCTATGAGTATTGGGGCATATGTGAAGCGGGGAGAAGAATCAGGCTACATTAAGATAACCTTGAGAGGGGACCATAAAGAGGAACACATTAACATTATGCGTAAAATTAATACCAATAACAAGTCTGAATGGATGCTCAATGGAAATGTGGTGCTTAAAAAGGATGTGGCTGAAACCATTCAAAGGTTTAACATACAAGTCAATAATTTGACTCAATTTTTACCGCAAGACAGGGTCAGTGAGTTTGCAAAGTTAAGTCCTGTTCAACTCCTGGAAGAGACCGAAAAGGCTGTTGGTGATCCACAGCTTCCAGAGCAACATCGAGCACTAGTTGATAAAAGTCGTTCATTGAAGCATATTGAGTTGTCTCTGGAGAAAAATGATGGAACTTTAAAACAGTTGAAGGAACGAAATGCTGAATTAGAGAAGGATGTTGAACGTGTTCGTCAAAGAGATGAACTTCTTACCAAGGCTGAAGCAATGAAAAAGAAGTTGCCATGGCTGAGGTATGATATGAAGCAGGCAGAATACCGGGAAGCTAAGGAGCATGAGAATGTTGCAGCAAAGGCATTGGAGGAAGCTGCAAAGTTATTAAATGATCATAAAGAGCCCATTATGAAACAAAAAGAAGAGAAGGCTGCATTAGATACAAAATGCAAAAAGGTTAGCAGCCATGTAAATGAGAATGCAAAGAAGCGAATCGAACTTATGGAAGAGGAGAACAAATTGGATGTGGAATTACGAGGAAAGTACAAAGAAATGGAAGAGTTGAGGAGGCAGGAAGAAACTCGACAACGAAGACTTGTAAAAGCTGGGGAGGAACTTGCTATCACTGAACTTGAACTTGAGAATCTACCCCCATATGTACCTCCTAAGGATGACCTTCAAAGACTAAAAGCCGAAATTGTGGAATTGGATTGTTCTGCTAATCAAGTGAGGCAGAATAAGTCACAAACAGAAAAAGAAATAAAGCGTAAGAAGTCATCCATGATGCAGATTAAAGAGAGGTTGATGGAAATGAATAATAAAAGTACAAAGTGTTTGCATGTATTGCAAAGATCAGGGGCTGAAAATATTTTTGATGCTTATAAATGGGTCCAAGAACATAGACATGAATTCAATAAGGAGATTTATGGCCCAGTTTTAGCAGAGGTGAATGTCTCAAATAGGGTTTATGCTGCATACCTAGAGGGTCAAGTGGCTCATTACACTTGGAAGTCCTTCATAACACAAGATGATGGCGATCGAGATCTTTTGGCAAAACACCTGCATGCACATGTTATAAATTATACTGGTGGTGGTGGCCGCCAAAGGGAGCCTTTTGAAATTTCTGAAGATAAGCGTGCTCTTGGCATCTACTCCCGGCTGGATCAAATTTTTGATGCTCCTATTGCTGTGAAGGAGGTTTTGATTAGCCAGTTTAATCTAGATAATTCATATATTGGATCCAAAGAAACTGATCAGAATGCTGATGAGGTCATAAAATTGGGAATTATAGATTTATGGACGCCTGAAAGTCACTACCGTTGGACCAAGTCTAAATATGTAAATCATATCTCTTTAGACGTTCGACCAGTGGAACACCCAAAACTTTTATTGAATAATTTGAATGTTGGTGAAATTGAGAAGCTGAGTTCTCAGCAAAGGGAGCTTGAAGAAGTCGTTGCTAATTTGGAGGATAGTGTTGAAAGGTTTCAAGATGAAGAAAGAAGCTTAGTGAATCAAGCTGCTAATCTTCGTAAACAGTGGGAGGGCATTAGTATTACAGTACAAAATGAGCATAAAAAACGTCAAGCAATCATTAGCCGTATTGATCAAAGGAAAGGGTTATTAAAATTGATGGAGGAACAGGATGATCTAGATACTGAGATAGCAAAGCTTGTTGATCAGGGTACAAAATATAACATTCAGCGTTTCCATAATGCAATGGAAATTAAGGATCTTCTTGTTGAAGCTGTGAGTTACAGACGGATTTTAATTGAACAACGTATGGCTTTCGTTGAATTTGATGCAAAGATAGGAGAAATGGAGGCCAATCTGAAGCAGCATGAGAATTTTGCCCTGCAAGCATCATTGCACTTTGATAACTGTAAGAAAGAATCTGAGAATTGTAGACAGAATCTTACAGATTCCTTGAAGTATGCTAAATCAATTGCTCGGCTTACACCTGAGCTAAAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAACTGGAAGCAGCCATCCAAGATACCACTTTTCAAGCCAATTCAATCCTCTTTGTCAATCATAATATATTGGAACAATATGAAGATCGTCAACGACAGATAGAAAATCTTGCAGCAAAACTGGAAGCAGACAAGAAGGAATCTACACGGTGTTTGGCTGAATTAAAAAATATTAAGGGAAAATGGCTTCCAAAGTTGAGAAACCTTGTGGCAAAGATAAATGAAACTTTCAGTTCTAATTTCCAAGAGATGGCTGTTGCTGGAGAAGTTTCACTAGATGAGCATGATATGGACTTTGATCAATTTGGAATAGTTATAAAAGTGAAATTCAGAGAAAATGCACAGCTTCAAGTTTTGAGTGCCCATCATCAATCTGGAGGGGAGCGATCAGTTTCAACAATTGTTTATCTAGTTTCCCTTCAAGATCTTACAAACTGCCCATTTAGAGTTGTTGATGAGATCAACCAAGGGATGGACCCAATAAATGAAAGGAAGATGTTCCAGCAATTAGTGAGAGCAGCAAGCAAGCCAAATACACCCCAGTGTTTCTTGCTTACCCCGAAATTGTTACCAGATCTGCAATATAGTGAGGCATGCAGTATATTGAATGTGATGAATGGCCCTTGGATTGAGCAACCATCGAAGGTATGGACTACTGGTGATAGATGGAGTATCATCACGGGACTTGTTCCAGACACCCATTGTTAA 3180 0.3959 MAEPRPPKRPKITSCLMILKLCFRGDDDYMPGNILEIELCNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRAMSIGAYVKRGEESGYIKITLRGDHKEEHINIMRKINTNNKSEWMLNGNVVLKKDVAETIQRFNIQVNNLTQFLPQDRVSEFAKLSPVQLLEETEKAVGDPQLPEQHRALVDKSRSLKHIELSLEKNDGTLKQLKERNAELEKDVERVRQRDELLTKAEAMKKKLPWLRYDMKQAEYREAKEHENVAAKALEEAAKLLNDHKEPIMKQKEEKAALDTKCKKVSSHVNENAKKRIELMEEENKLDVELRGKYKEMEELRRQEETRQRRLVKAGEELAITELELENLPPYVPPKDDLQRLKAEIVELDCSANQVRQNKSQTEKEIKRKKSSMMQIKERLMEMNNKSTKCLHVLQRSGAENIFDAYKWVQEHRHEFNKEIYGPVLAEVNVSNRVYAAYLEGQVAHYTWKSFITQDDGDRDLLAKHLHAHVINYTGGGGRQREPFEISEDKRALGIYSRLDQIFDAPIAVKEVLISQFNLDNSYIGSKETDQNADEVIKLGIIDLWTPESHYRWTKSKYVNHISLDVRPVEHPKLLLNNLNVGEIEKLSSQQRELEEVVANLEDSVERFQDEERSLVNQAANLRKQWEGISITVQNEHKKRQAIISRIDQRKGLLKLMEEQDDLDTEIAKLVDQGTKYNIQRFHNAMEIKDLLVEAVSYRRILIEQRMAFVEFDAKIGEMEANLKQHENFALQASLHFDNCKKESENCRQNLTDSLKYAKSIARLTPELKKEFLEMPTTIEELEAAIQDTTFQANSILFVNHNILEQYEDRQRQIENLAAKLEADKKESTRCLAELKNIKGKWLPKLRNLVAKINETFSSNFQEMAVAGEVSLDEHDMDFDQFGIVIKVKFRENAQLQVLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEQPSKVWTTGDRWSIITGLVPDTHC 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00321 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 290 IPR027417 -
Pumo11g00321 1059 Pfam RecF/RecN/SMC N terminal domain 35 1000 IPR003395 -
Pumo11g00321 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 1010 IPR027417 -
Pumo11g00321 1059 Gene3D - 854 1029 IPR027417 -
Pumo11g00321 1059 Coils Coil 697 717 - -
Pumo11g00321 1059 Coils Coil 327 361 - -
Pumo11g00321 1059 Coils Coil 382 430 - -
Pumo11g00321 1059 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 1048 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Pumo11g00321 1059 Coils Coil 211 245 - -
Pumo11g00321 1059 Coils Coil 628 669 - -
Pumo11g00321 1059 Coils Coil 844 882 - -
Pumo11g00321 1059 Gene3D - 33 239 IPR027417 -
Pumo11g00321 1059 Coils Coil 260 287 - -
Pumo11g00321 1059 FunFam Structural maintenance of chromosomes 5 855 1026 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00321 Pumo-Chr11 11661277 11679437 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00321 5 1048 Structural Maintenance of Chromosomes family AT5G15920 60.745 0.0 1255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00321 K22803 - gmx:100778678 1822.36