Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00307 ATGGTGGAGATGTCTGTTCAACATGAAAATTCTGATACTAATGGTGTATCGGGATCAGGATCTTGCCTTTATGATCTCTTCTGTTCTGAAACACCAAGTTTGAATACTCAAATTCTAAGAGAACGATGGATGTCTTCCGGTCCACAAAAAAGGCTAGACAATTTGATGCGTCAAGCTGGGAACAAGTATTGTGCTGATTGTGGATCATTGGAGCCAAAATGGGTGTCTTCAAGTCATGGAGTATTTATTTGCATCAAATGCTCTGGTATACATAGAAGCCTAGGTGTCCATATATCAAAGGTTCTATCACTAAAGCTAGATCAATGGACAGATGAACAAGTTGATGCATTGGTGAAGTTGGGTGGAAATACAGTAATCAACAATAAGTATGAAGCTTGCATTCCAAGTAATATAAGAAAACCAAAACCAAATTCTTCCATTGAGGAGCGCTCTGATTTTATTAGGAGAAAATATGAGTTTCTACAGTTTTTGGATACTGAGGAGAATATGACTTGTCCCTTTGTACCATCTCATGCAAGAAGTTCATCATCTTCCCATAGCAGTTCCTCAAGCAACAATTCCTCACAAGACAAAAAGCGTTATGATAAACAACCAACTAAAAATCGTATTGGGAGCGCATTTCGAAATAGTCGGGGAAGAAAAGACTCTGGGAATAAGAGTTCAAAGAAGAGCAACTCATTGGTAGGCATGATTGAATTTATTGGGTTGATCAAGGTCAATGTGGTTAAAGGCACTAACCTTGCTATTCGTGATGTAATGAGTAGTGACCCTTATGTCATCATATCTCTTGGTCACCAATCAGTGAAGACACGTGTCATAAAAAGCAGTTTAAACCCAGTTTGGAATGAAAGCCTAATGTTGTCAATTCCCGATCACATTCCTCCTCTTAAAGTGCTTGTGTACGACAAGGATACTTTCTCAACTGATGATTTTATGGGCGAGGCTGAAATTGACATTCAACCTCTAGTTACAGCTGCAAAGGCATATGAGAAATCTTCAATCAATGAATCCATGCAGCTTGGAAAATGGGTAGCAAATGGTGACAACACTCTTGTTAGAGATGGTATCATCTCGCTTGAAGATGGGAAGGTCAAACAGGAGATCTCAGTGAGACTACAACATGTTGAGAGAGGAGTGCTAGAGATTGAACTTGAATGTGTTCCTCTAACTCAGTAG 1197 0.3926 MVEMSVQHENSDTNGVSGSGSCLYDLFCSETPSLNTQILRERWMSSGPQKRLDNLMRQAGNKYCADCGSLEPKWVSSSHGVFICIKCSGIHRSLGVHISKVLSLKLDQWTDEQVDALVKLGGNTVINNKYEACIPSNIRKPKPNSSIEERSDFIRRKYEFLQFLDTEENMTCPFVPSHARSSSSSHSSSSSNNSSQDKKRYDKQPTKNRIGSAFRNSRGRKDSGNKSSKKSNSLVGMIEFIGLIKVNVVKGTNLAIRDVMSSDPYVIISLGHQSVKTRVIKSSLNPVWNESLMLSIPDHIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVTAAKAYEKSSINESMQLGKWVANGDNTLVRDGIISLEDGKVKQEISVRLQHVERGVLEIELECVPLTQ 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00307 398 Pfam Putative GTPase activating protein for Arf 50 165 IPR001164 GO:0005096
Pumo11g00307 398 Pfam C2 domain 243 332 IPR000008 -
Pumo11g00307 398 CDD ArfGap 52 158 - -
Pumo11g00307 398 SMART arf_gap_3 50 171 IPR001164 GO:0005096
Pumo11g00307 398 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 240 398 - -
Pumo11g00307 398 Gene3D Arf GTPase activating protein 35 172 IPR038508 -
Pumo11g00307 398 FunFam stromal membrane-associated protein 1 isoform X1 36 169 - -
Pumo11g00307 398 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 240 333 IPR035892 -
Pumo11g00307 398 MobiDBLite consensus disorder prediction 175 195 - -
Pumo11g00307 398 CDD C2_ArfGAP 241 385 - -
Pumo11g00307 398 ProSiteProfiles C2 domain profile. 222 340 IPR000008 -
Pumo11g00307 398 Gene3D C2 domain 241 396 IPR035892 -
Pumo11g00307 398 MobiDBLite consensus disorder prediction 174 230 - -
Pumo11g00307 398 SMART C2_3c 243 338 IPR000008 -
Pumo11g00307 398 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 44 398 IPR044518 GO:0005096|GO:0005543
Pumo11g00307 398 SUPERFAMILY ArfGap/RecO-like zinc finger 49 164 IPR037278 -
Pumo11g00307 398 PRINTS HIV Rev interacting protein signature 61 80 IPR001164 GO:0005096
Pumo11g00307 398 PRINTS HIV Rev interacting protein signature 101 122 IPR001164 GO:0005096
Pumo11g00307 398 PRINTS HIV Rev interacting protein signature 80 97 IPR001164 GO:0005096
Pumo11g00307 398 ProSiteProfiles ARF GTPase-activating proteins domain profile. 49 171 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00307 Pumo-Chr11 11234336 11242038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00307 49 398 C2H2 Transcription Factor Family AT4G21160 48.286 5.95e-118 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00307 K12486 - gmx:100799376 688.337