Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00302 ATGTCCATCGACACCTCCTTCGCGGACCACAAGCTCTGCGGTTTCCTCTGTGCGGTTCTCACACTCCCCCGCCGCGACGACGCCGTTTCCTTCGCGGAGCGCTGCGAGGTCTTCGGCGACGGGGGCGAGGTCGGGCTCCGGACCCAGAACGGCGTCGTTTTGGGCCCCGTGGTGGATTCGTCGTCGCAATGCGGTGGCGGTGGCGGCGGCGGCACCAAAACCAAGAGGACGAACAGGATTGGGATGGTGAACGGGAGCATGAGCGTGGTTCACCAGCTCCACGCTATGGTCACCCGCAAGTGCACCAAGATCGACGCTCGCGTGGTGTGCGCTGAGGCGCTTCCTAGGGTTGTGGTGCTCGTTGACGTGTATGTCCCCGTTCAGGTGTGGAGTGGCTGGCAGTTCCCGCGGTCGGGACCCGTCGCCGGCGCCGTTTTTCGCCATTTGAGCTGTGATTGGGATGAGAGAAGTTCAATGCTTTCATATCCAGACTATTGTAGTAAGAGTCATGGAGCAAATGAGAGCATTTGGAACCTTTCTGATTGTCATGTACTTGGTTGCAAGCTCCATTCCCGTGTGAGAAATTCTTCAAGGAAAAGGCTATTTGAACTTCATGAAATTTTTAAGACACTACCTGGTGTAGGAAAATGGCAGACGTTTAATAGTTCGAAGATAATACCTATGGATAACACTTGCAGATCAGGCATTTGGGAGATATCTGATGATATTTTAACTAAAATTTTAGCTTCCCTGGGCCCAATGGACCTCGCTAGGGTTTCAGCAACATGCCATCATCTAAGATCCTTGGCTGCCTCAGTAATGCCTTGTACAAAGTTAAATCTGTTTCCTCATCAGCGGGTAGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTGAGCTTTTGCCACATCCTTTATATGTAGCTCTCTCAACTGATGATGGCTTTAGTTTCCATGTAAATACTGTATCTGGTGAAATTGTCACTGGGGAAGCTCTCACCATCAAGGATTTTCGTGGAGGAATGTTTTGTGATGAGCCTGGCTTGGGTAAGACTGTAACAGCTCTCTCTCTTATTATGAAGACGCGAGGTACATTGGCAGACCCGCCAGATGGGGCACACGTAATCTGGTGTCAACATAATGGTAATCAGAAATGTGGTTATTATGAGATCAGTGGTAATAACATCACTGGTTGTACTACCTTGGGTAAGAGGGATGTGTACCAAGATACCAGTAGAACTAATGATAACCATGATTACTCCTCCAAAAGAGCCAGATTGACAGATCCTGATCAGCAAGTCACTAAACTTCGTGGTTCATGTTCCAGGGAAGGAAACAAATCACCAGTAGATGCATGCTTTGAGGAATCTATGCATTCAAATCGGTTGACTAGGAGTTTGAGTCGCATAAAGAAAAATTTACGTTTCACATATGAAGAGGAAGCTATGATTTTCAAGGAAAGAGAAATTGGTGAAGGATTAATTAAAGCAAAGCATGCATCAGATGTTACATCTCATGTATCTCAAAACAAGGTGTCTGGGAAGCCTAAAGGTGATTGTTTTGAGTATAGTGAAACGTGGATTCAGTGTGATGCTTGTCAGAAGTGGCGAAAGCTTGCAGACAATAGTATGGCTAATTCTAGTGCAGCATGGTTTTGTAGTATGAACACTGACCCTTTGTATCAAAGTTGTAGTGTCCCTGAACAATATTTTCATAATACCTGTAAGATAACATACTTGCCAGGGTTTCACTTGAAAGGAACTTGTGGTGGTGAGAAACAAAATGTTTCTTTTTTCACTAGCGTGCTTAAGGAGCACCACTCATTGATAAATTCTCAGACAAAGAAGGCCCTGACGTGGTTGGCTAAAATTTCAACAGACAAACTTGCAGGAATGGAAACAATTGGCATAAGGGGTCCTATTTTAAACATTTGTACTTCATCTAATGGACATCTCAATGCATTCCACAAAATATATCAAGCATTTGGCCTCTTAAAGAGAGTAGAGAAAGGTGTGTGCAAGTGGTACTACCCTCAACATCTTAACAATTTGACTTTTGATGTGGTGGCCCTTGGTATGGCTCTCCGTGAGCCATTAGATTTTGTTAGGTTATACTTGTCAAGAGCTACCCTGGTAGTTGTTCCAGCAAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTGAGGCCCGGTCAATTGCGGGTGTATGTTTGGACTGATCATCGGAAGCCATCTGTTCATTGTCTTGCATGGGATTATGATGTTGTCATAACTACTTTCAGTCGCTTGAGTGCAGAGTGGCGCCCACGTAAGAGGAGTGTTTTGATGCAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGGCACACTCTTGGGTCAAGCCTGAACTTAACGAACAAGTTGCAAATGGCTATTTCATTGATAGCTTCAAATCGATGGATACTAACAGGAACTCCAACACCTAACACTCCTAACAGCCAACTTCCACATCTACAACCATTGCTAAGGTTCCTTCATGAAGAATCTTATGGACTGAATCAAAAGTCATGGGAAGCTGGCGTGCTTAGGCCATTTGAAGCAGAGATGGAGGAAGGAAGGTGTCGTCTGTTACATTTACTTCACAAATGCATGATTAGTGCTAGAAAGATAGATTTACAAAGCATTCCACCATGCATCAAGAAAGTTGTTTATCTAGATTTTAATGAGGAGCATGCTAGAAGTTACAATGAATTGGTAATCACTGTACGACGTAATATATTGATGGCTGATTGGAATGATCCTTCACATGTTGAGAGTCTACTAAATCCAAAACAGTGGAAATTTCGTAGTGCAACTTTAAAAAATGTGAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAAGAAACAATGGATATGTTAGTAGAAAGTGGTCTGGACCCTACTTCAGGAGAGTATACCTCCATAAGATATAATCTCTTGTTTGGTGGTCACTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCGCTCATTACACCATGTCGGCATCTGTTGTGCCTTGATTGTGTTTCTATAGACAATACAAAGTGTACTTATCCTGGCTGCAGTAAATTGTATGAGATGCAGAGTAGAGAGCCCCGACCTGAAAATCCTAAACCAAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAGCAGGATAATTGGGATCCTGATTGGCAATCTACATCTAGTAGTAAAGTCTCCTATCTCGTCCAGAGGTTGAAAGCTTTGCGAGGAACCAATGAAGAGACAAACTTCAATACAGAAAATAGCAGTGATGAGATGCATATTGAGAATAGTTTCTATCTGCATAGAAGAAATGACAAATCATCAATTCAGAGCAGCACTAAGACCAATTTGAACCCTGAGAAAGTTCTGATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTATTGCTGGTATCAAATATACTGGAATGTATAGCCCAATGCATTCCAGCAACAAGAAGAAGTCATTAGCCATGTTCCAGCATGATTCAAGTTGTATGGCACTTCTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACGCATGTATTTCTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCTCATCGTATGGGTGCTTCTCGTCCTATTCATGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGCCTTTTTACAGGATGCTGATAACTTTAGAAGATCACCGATTAAGGATGTTACTGAATCTGACGATGATAGTGGGGGACGAGGATATAAATCATTGCATGATTTTGCTGAAAGTAGTTATCTACTGAAACTTAGATCTGTGTATACTAATTCGGAAAGTCCCGAAGGTGTTTTGATTGATCAACATCAAGCAAGTACTGACTAA 3984 0.4307 MSIDTSFADHKLCGFLCAVLTLPRRDDAVSFAERCEVFGDGGEVGLRTQNGVVLGPVVDSSSQCGGGGGGGTKTKRTNRIGMVNGSMSVVHQLHAMVTRKCTKIDARVVCAEALPRVVVLVDVYVPVQVWSGWQFPRSGPVAGAVFRHLSCDWDERSSMLSYPDYCSKSHGANESIWNLSDCHVLGCKLHSRVRNSSRKRLFELHEIFKTLPGVGKWQTFNSSKIIPMDNTCRSGIWEISDDILTKILASLGPMDLARVSATCHHLRSLAASVMPCTKLNLFPHQRVAVEWMLHRERNAELLPHPLYVALSTDDGFSFHVNTVSGEIVTGEALTIKDFRGGMFCDEPGLGKTVTALSLIMKTRGTLADPPDGAHVIWCQHNGNQKCGYYEISGNNITGCTTLGKRDVYQDTSRTNDNHDYSSKRARLTDPDQQVTKLRGSCSREGNKSPVDACFEESMHSNRLTRSLSRIKKNLRFTYEEEAMIFKEREIGEGLIKAKHASDVTSHVSQNKVSGKPKGDCFEYSETWIQCDACQKWRKLADNSMANSSAAWFCSMNTDPLYQSCSVPEQYFHNTCKITYLPGFHLKGTCGGEKQNVSFFTSVLKEHHSLINSQTKKALTWLAKISTDKLAGMETIGIRGPILNICTSSNGHLNAFHKIYQAFGLLKRVEKGVCKWYYPQHLNNLTFDVVALGMALREPLDFVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRVYVWTDHRKPSVHCLAWDYDVVITTFSRLSAEWRPRKRSVLMQVHWFRIILDEGHTLGSSLNLTNKLQMAISLIASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEESYGLNQKSWEAGVLRPFEAEMEEGRCRLLHLLHKCMISARKIDLQSIPPCIKKVVYLDFNEEHARSYNELVITVRRNILMADWNDPSHVESLLNPKQWKFRSATLKNVRLSCCVAGHIKVTHAGEDIQETMDMLVESGLDPTSGEYTSIRYNLLFGGHCVRCKEWCRLPLITPCRHLLCLDCVSIDNTKCTYPGCSKLYEMQSREPRPENPKPKWPVPKDLIELQPSYKQDNWDPDWQSTSSSKVSYLVQRLKALRGTNEETNFNTENSSDEMHIENSFYLHRRNDKSSIQSSTKTNLNPEKVLIFSQFLEHIHVIEQQLTIAGIKYTGMYSPMHSSNKKKSLAMFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLAFLQDADNFRRSPIKDVTESDDDSGGRGYKSLHDFAESSYLLKLRSVYTNSESPEGVLIDQHQASTD 1327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00302 1327 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1132 1285 IPR001650 -
Pumo11g00302 1327 Pfam CW-type Zinc Finger 526 569 IPR011124 GO:0008270
Pumo11g00302 1327 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 674 839 IPR014001 -
Pumo11g00302 1327 ProSitePatterns Zinc finger RING-type signature. 1017 1026 IPR017907 -
Pumo11g00302 1327 Pfam Helicase conserved C-terminal domain 1138 1239 IPR001650 -
Pumo11g00302 1327 Gene3D - 522 574 - -
Pumo11g00302 1327 SMART fbox_2 239 279 IPR001810 GO:0005515
Pumo11g00302 1327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 706 864 IPR027417 -
Pumo11g00302 1327 CDD DEXDc_SHPRH-like 703 880 - -
Pumo11g00302 1327 Pfam F-box domain 239 273 IPR001810 GO:0005515
Pumo11g00302 1327 SUPERFAMILY F-box domain 230 272 IPR036047 GO:0005515
Pumo11g00302 1327 SMART helicmild6 1157 1239 IPR001650 -
Pumo11g00302 1327 SMART ultradead3 277 850 IPR014001 -
Pumo11g00302 1327 ProSiteProfiles Zinc finger CW-type profile. 521 572 IPR011124 GO:0008270
Pumo11g00302 1327 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 96 1264 - -
Pumo11g00302 1327 Pfam SNF2-related domain 284 925 IPR000330 GO:0005524|GO:0140658
Pumo11g00302 1327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 362 IPR027417 -
Pumo11g00302 1327 Gene3D - 685 883 IPR038718 -
Pumo11g00302 1327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 781 1294 IPR027417 -
Pumo11g00302 1327 CDD SF2_C_SNF 1142 1249 - -
Pumo11g00302 1327 CDD F-box_SF 238 270 - -
Pumo11g00302 1327 Gene3D - 1044 1305 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00302 Pumo-Chr11 11118233 11130757 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00302 709 1261 RAD5 or RAD16-like Gene Family AT5G22750 25.801 2.79e-43 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo11g00302 SNF2_N 3.9e-97 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00302 - - gmx:100803102 2442.15