Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00300 ATGGAAAACCCCGACCCCGCTAGACGTAGCTTGAAGCGCAAGCTCGAACTAGTAGACCAAACAGATCCCCATGTTGTTGAACAACCTTACTCCGATTTCTCTACCAGATTCTCCAACAAGTTTCTCTCCTCAATTCCGCTCTTTCACCCTCCGCCTCCGCATCCGATCGTGCCGCCTTTGGTTGACTCCGGCAGAGGACCTCCTCATGGATACTTTAGTGTTGTCCCTGTTATAGTGAGGCATCTTCAGGCGGCGCTAGAGGCCGTAAAAGACGACAGTGACGGTGACGGCGCTATCCAACCTTTTCAGCATGAAGTGGAGGAAGGATGTGCTTTAATCCTCAACTTTCTTGCCATAAAACTAGAGCATCAACAACTCATTATAGATGCTGGAGCCTTGCCCTGTCTTATTGATTTGTTAAGGAGGCACAAGATCAGTACCATTTCTCAGCCACTTATTAAACTTCTAAGGAGAGCAGCTGATGCAATATTCAACCTTGCCCGCAAAAATACCACCATTAGGACCCTTGTCAGGATGGAAGGCGGTATCCCTCCTCTTGTTGAATTGCTTGAATTCAATGTCACAGAGGTACAAAGATCTGCTGCACTCGCCTTGCAAGCTCTTTCATTCGAAAATGACGACAATCAAAAGCAGATTGTTGAATGCAATGCATTACCCACTCTTGTACTAATGCTTCGATCAGAGGATTCTACAACACGTTTTGCGGCAGTTTCTGTGATTGAAATTCTGGTCCACTCTTTACCAGATATTCAGAAAGACGTTCTTCAAGCTGGGGCTTTACAACCTGTCATTTGTTTACTTAGGTAG 828 0.4589 MENPDPARRSLKRKLELVDQTDPHVVEQPYSDFSTRFSNKFLSSIPLFHPPPPHPIVPPLVDSGRGPPHGYFSVVPVIVRHLQAALEAVKDDSDGDGAIQPFQHEVEEGCALILNFLAIKLEHQQLIIDAGALPCLIDLLRRHKISTISQPLIKLLRRAADAIFNLARKNTTIRTLVRMEGGIPPLVELLEFNVTEVQRSAALALQALSFENDDNQKQIVECNALPTLVLMLRSEDSTTRFAAVSVIEILVHSLPDIQKDVLQAGALQPVICLLR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00300 275 SUPERFAMILY ARM repeat 104 271 IPR016024 -
Pumo11g00300 275 Pfam Armadillo/beta-catenin-like repeat 122 168 IPR000225 GO:0005515
Pumo11g00300 275 Pfam Armadillo/beta-catenin-like repeat 212 247 IPR000225 GO:0005515
Pumo11g00300 275 Pfam Armadillo/beta-catenin-like repeat 176 206 IPR000225 GO:0005515
Pumo11g00300 275 Gene3D - 71 275 IPR011989 -
Pumo11g00300 275 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 131 181 IPR000225 GO:0005515
Pumo11g00300 275 SMART arm_5 120 168 IPR000225 GO:0005515
Pumo11g00300 275 SMART arm_5 212 252 IPR000225 GO:0005515
Pumo11g00300 275 SMART arm_5 170 210 IPR000225 GO:0005515
Pumo11g00300 275 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 181 216 IPR000225 GO:0005515
Pumo11g00300 275 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 73 274 IPR044282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00300 Pumo-Chr11 11089096 11092994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00300 117 275 U-box Gene Family AT5G62560 29.375 4.06e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00300 - - gmx:100783124 233.802