Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00272 ATGGAGGATAACAATAATAAAGCAGAGAAGCAAGATGATAGTAGCAGCCACCACCCATCTCTCCTCCTTCCTAATCATAATAGCACCATCAACATCATCAAGGAGGATCATCAATCTCCAAGGAAAGCCATTGGTGGCGGTGGCGGTGGCGGCGGTGATAGGTTAAAGAGAGATGAGTGGAGTGAAGGGGCTGTGTCAACCCTTCTTGAGGCCTATGAGGCCAAATGGGTGCTCAGAAACAGAGCCAAACTCAAGGGTCATGACTGGGAAGATGTTGCAAAACATGTCTCATCAAGAGCAAACTCCACCAAGTCACCAAAGACTCAGACTCAGTGCAAGAACAAGATTGAGTCCATGAAGAAGAGGTACAGATCAGAGTCTGCAACCACTGCTGATGCCTCCTCTTGGCCTTTGTATTCTCGCCTAGACGTTCTGCTTCGCGGGACGGGACCGATATCTTCTTCTTCACTGCCACCACCAATAGCAGTAGCAACAGGAACAACAGCAACAACAGCAGCAGCACCATCATCTCAATCACCACATAGCCAGGCTTTGGTGTTGTTGGAGACACCTTCACTGGCTGTGTCACAAGCACCTCATCAGCAACCACCTCCACCACCTGCAATTGCACAAAACTCACATGGGTCCAATGGTGTTGAAAGACTACTAACCAAGGAAGATGGGTTGGGAGCCAAGTCATCCGAGCATGTATCAAACAAGAATCCAATGGACTCGGATAGTAGCACACCTGCTCTTTACAGTGAAAAGGACAAGGTGAGATGCAACAAGAGGAAGATGAAAAGTGAGAACAACAACAAGAGGAGAAGGAACAATAATAATGAGGACAACAACATGGAAATAGCAGAGAGCATAAGGTGGCTTGCTGAAGTGGTGGTGAGGTCAGAACAAACAAGAATGGACACAATGAAAGAGATTGAGAGGATGAGGGTTGAAGCTGAGGCTAAGAGAGGGGAGATGGAGCTTAAGAGAACTGAAATCATTGCCAACACACAACTAGAGATTGCTAGGATCTTTGCAAGTGTCAATAATAAAGGTGTTGATTCATCACTAAGAATTGGAAGAAGTTAA 1089 0.4628 MEDNNNKAEKQDDSSSHHPSLLLPNHNSTINIIKEDHQSPRKAIGGGGGGGGDRLKRDEWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVAKHVSSRANSTKSPKTQTQCKNKIESMKKRYRSESATTADASSWPLYSRLDVLLRGTGPISSSSLPPPIAVATGTTATTAAAPSSQSPHSQALVLLETPSLAVSQAPHQQPPPPPAIAQNSHGSNGVERLLTKEDGLGAKSSEHVSNKNPMDSDSSTPALYSEKDKVRCNKRKMKSENNNKRRRNNNNEDNNMEIAESIRWLAEVVVRSEQTRMDTMKEIERMRVEAEAKRGEMELKRTEIIANTQLEIARIFASVNNKGVDSSLRIGRS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00272 362 MobiDBLite consensus disorder prediction 234 250 - -
Pumo11g00272 362 MobiDBLite consensus disorder prediction 230 283 - -
Pumo11g00272 362 FunFam Trihelix transcription factor ASIL2 60 125 - -
Pumo11g00272 362 MobiDBLite consensus disorder prediction 195 215 - -
Pumo11g00272 362 Gene3D - 60 125 - -
Pumo11g00272 362 MobiDBLite consensus disorder prediction 1 58 - -
Pumo11g00272 362 Pfam Myb/SANT-like DNA-binding domain 57 144 IPR044822 -
Pumo11g00272 362 MobiDBLite consensus disorder prediction 1 16 - -
Pumo11g00272 362 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 20 348 IPR044823 -
Pumo11g00272 362 MobiDBLite consensus disorder prediction 17 34 - -
Pumo11g00272 362 Coils Coil 309 329 - -
Pumo11g00272 362 MobiDBLite consensus disorder prediction 251 282 - -
Pumo11g00272 362 Coils Coil 256 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00272 Pumo-Chr11 9888490 9891401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00272 40 162 Trihelix Transcription Factor Family AT3G14180 36.296 7.31e-19 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo11g00272 Myb_DNA-bind_4 8.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00272 - - gmx:100799917 509.605