Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00269 ATGTTTGGACTTGATGGATCAGTATCAGGTAGGGAGACCTCCTGTGAAGCTCCATCAAGGATGCCTCAGTCACGCAAAATTGAGAGGCCGTATGTGTGTGCCGTTGATAACTGTCAGGCAAGTTACCGAAGGAAGGACCACCTGACTCGTCATCTTTTACAGCATCAAGGGAAGACTTTTAAATGCCCTATTGAGAATTGCAAAACTGAGTTCTCTTTGCAAAGCAATATGAAACGACATGTTGAGGAGATCCATGATGACAGTTCTACCTCTACCAGTGACAAAAGTCATAAGCAGCATGCATGTCCAGAAATTGGTTGTGGGAAGGTTTTTAGATTTGCCTCGCAGCTACGAAACCATGAAGGTTCTCATGTCAAGCTGGAGTCGGTAGATGCGGTGTGCTTAGAGCCTGGTTGCATGCAACATTTCACTAATGTCCAGTGCCTTCAAGCCCATGTTAAGTCCTCCCATCAATATATGACCTGTGACACTTGTGGAACTAAGCAACTGAAGAAGAATATTAAGCGTCACCTTCGTTCACATGAACCCGGTAGTTCATCGGCAACCTTTCGATGTGGGTTTAAGGGCTGTAGCCGCACATTCTCAAGAAAATCTAATCTTGTTAAGCATAAGAAGGCTGTGCACTTTAAGGAAAAGCCTTATGTGTGCGGGTTTCCTGATTGTGGCATGAGATTTGCTTACAAACACGTGCGAGATAACCATGAGAAAACTGCAAAACATGTTTTTACCCTTGGGAATTTTGAAAAAGCTGATGAAGAGTTCAGGTCAAGGCCGAGGGGAGGGAGGAAGAGAAAATGTCCTACTGTTGAAATGTTAGTTAGGAAAAGGGTTACCTCATCGAGTCAATTGGAGAGTTGGTTATGCTTGCAGGATAGTGAGTAA 903 0.4408 MFGLDGSVSGRETSCEAPSRMPQSRKIERPYVCAVDNCQASYRRKDHLTRHLLQHQGKTFKCPIENCKTEFSLQSNMKRHVEEIHDDSSTSTSDKSHKQHACPEIGCGKVFRFASQLRNHEGSHVKLESVDAVCLEPGCMQHFTNVQCLQAHVKSSHQYMTCDTCGTKQLKKNIKRHLRSHEPGSSSATFRCGFKGCSRTFSRKSNLVKHKKAVHFKEKPYVCGFPDCGMRFAYKHVRDNHEKTAKHVFTLGNFEKADEEFRSRPRGGRKRKCPTVEMLVRKRVTSSSQLESWLCLQDSE 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00269 300 Gene3D Classic Zinc Finger 219 244 - -
Pumo11g00269 300 SUPERFAMILY beta-beta-alpha zinc fingers 28 57 IPR036236 -
Pumo11g00269 300 MobiDBLite consensus disorder prediction 1 22 - -
Pumo11g00269 300 ProSitePatterns Zinc finger C2H2 type domain signature. 33 55 IPR013087 -
Pumo11g00269 300 PANTHER ZINC FINGER PROTEIN 26 288 - -
Pumo11g00269 300 ProSitePatterns Zinc finger C2H2 type domain signature. 134 157 IPR013087 -
Pumo11g00269 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 31 60 IPR013087 -
Pumo11g00269 300 ProSitePatterns Zinc finger C2H2 type domain signature. 102 124 IPR013087 -
Pumo11g00269 300 Gene3D Classic Zinc Finger 59 86 - -
Pumo11g00269 300 Pfam Zinc finger, C2H2 type 190 215 IPR013087 -
Pumo11g00269 300 Pfam Zinc finger, C2H2 type 31 55 IPR013087 -
Pumo11g00269 300 Pfam Zinc finger, C2H2 type 101 124 IPR013087 -
Pumo11g00269 300 ProSitePatterns Zinc finger C2H2 type domain signature. 223 247 IPR013087 -
Pumo11g00269 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 90 IPR013087 -
Pumo11g00269 300 ProSitePatterns Zinc finger C2H2 type domain signature. 192 215 IPR013087 -
Pumo11g00269 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 190 220 IPR013087 -
Pumo11g00269 300 SUPERFAMILY beta-beta-alpha zinc fingers 58 86 IPR036236 -
Pumo11g00269 300 Gene3D Classic Zinc Finger 87 159 - -
Pumo11g00269 300 Gene3D Classic Zinc Finger 191 218 - -
Pumo11g00269 300 SMART c2h2final6 60 85 IPR013087 -
Pumo11g00269 300 SMART c2h2final6 31 55 IPR013087 -
Pumo11g00269 300 SMART c2h2final6 221 247 IPR013087 -
Pumo11g00269 300 SMART c2h2final6 190 215 IPR013087 -
Pumo11g00269 300 SMART c2h2final6 160 181 IPR013087 -
Pumo11g00269 300 SMART c2h2final6 132 157 IPR013087 -
Pumo11g00269 300 SMART c2h2final6 100 124 IPR013087 -
Pumo11g00269 300 ProSitePatterns Zinc finger C2H2 type domain signature. 62 85 IPR013087 -
Pumo11g00269 300 Gene3D Classic Zinc Finger 7 58 - -
Pumo11g00269 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 129 IPR013087 -
Pumo11g00269 300 SUPERFAMILY beta-beta-alpha zinc fingers 171 229 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00269 Pumo-Chr11 9838378 9841323 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00269 27 250 C2H2 Transcription Factor Family AT1G72050 48.551 2.61e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo11g00269 zf-C2H2 8.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00269 K09191 - gmx:100801812 493.041