Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00259 ATGCACGAGATTTCATTATTGAATGGAAATGATACCCGTGAATTGTTTTATAGAAAAGCCTTCAACAGTGAAGACCAAAGTAGTAGTTGTGTGGAGTTGATTCCCGAGGTATTAAAATATGTCCAATGTCTTCCGTTAGCAATTAGAGTAATGGGTTCTTTCTTGTGTACTCGAGATGCTACTCAATGGAGAGATGTCTTGGATAGATTGAAGACAAATCCAAATGATAAAATTATGAATGTACTTCAAATAAGTGTTGATGTACTAGAATATGAGGAAAAAGAAATATTTTTACACATTGCATGTTTCTTTAAAGGGGAGAGGGTGGATTATGTTAAGCGAATTCTAGAATGTTGTGGATTACACCCTCACATTGGAATTCCAAGAATCATTGAGAAATCCTTGATAACTATTAGGGATCAAGAAATTCACATGCATGATATGTTTCAGGAATTGGGAAAGAAAATTGTTCGCGACCAATTTCCAGAAGAGCCAGGATTATGGAATAGATTATGGCTTTATGAAGATATCCATCACGTCTTAATGGCGAAAACGGGAACAGATAATGTTAAAGCCATAGTTATGAATCTAAAAGAAGATATCTTCAAATGTGAGGTTGATGGATTGTCAAAAATGAAGAATCTTAGATTACTCATATTATATCATCAAAATTTTTCAGGAAGCCTCAATGCTCTTTCCCACGAGCTGCGGTATCTTTTGTGGCATGGTTATCCTTTTGCTTCTTTGCCATCAAATTTTACGGCCGTTAATCTTGTGGAATTGAATATGCCTAATAGTAGTAGCATCAACCTTTTTAGGGAAGGCCCCAAGGATTTCCCGTGTCTGAAAAGGATGGATTTGAGCAACTCCAAATATCTTATAGAGACTCCAGATTTTTCCGGGATCCCAAAACTCGAGAGGCTTGATCTTTCAGGATGCACAAATTTATTATATGTCCATCCATCAATTGGACTTCTTGAAAAACTTGCTTTCTTGAGTTTACGAAATTGTAGCAGTCTAGTCAACATCCACTTTGGCCGGGGATCTAATCTAAGTTCTCTGATAGTTCTACATTTCTCTGGTTGCACTAAACTTGAAAACATGCCAGATTTTACAAGTGCAACAATTCTCAAGTACCTTGACTTTGAGGGATGTACAAGTTTAACCTTGGTTCATGAATCTATTGAGGCTCTTTTCAAACTCACATTCTTGAGTTTGAGAGACTGCAAAAATGTTGTTAGTATACCTAACAGCATTAATACCATGATATCTCTTCAAACTCTAGATTTATGTGGCTGTTTGAAACTTACGGATTTGCCCGTAAAACAAGCTTTCAAATCTGTATCGTTGGTATCTTTGATATTTTTGGACATAGGATTTTGCAATCTACTTGAAGTACCTGATGCTATCAGAGTGTTAGGGTGTTTAGAAAGATTGAATCTACAGGGAAACAATTTTGTTTCACTTCCATATGGTTCCCTCAGTTGCCTACCTCGTCTAGCATATTTAAACTTGTCGCATTGCCATGAGCTTGTAGTTCGAACTTTGCCTTGCCTTCCATCAGGGGGGGATTCATCAGGGGGAAGGTATTTTAAAACGGTATCCGGATCTCGTGATCATAGGTCAGGTTTATATGTTTTTGATTGTCCCAAGGTGACTATGGTGTCCTTGCGCAAGGACACGGAACTTGTATGGTTTGTAAGACTAATTGAGGAGCCTTATCATTTTCGGTGTGGCTTTGACATTGTTGTTCCTGGGTATTGGGGAAATAAAATTTCACGGTGGTTCGGTACAAAATTTGATAGGGGTTCAATTACAAGGATAAAGAACTTTAATATGGATGACAACTGGATTGGCTTTGCCTTCTGTGTTGTATTTCAAAGGAAGACGAAGTTGAGAATATTAAAGCAAAGACAAAAGAAAATAATCTCTCTTATGCGGGGCTTTAAACACGCTAGCCAAGATAAACATCTTCTTCGGACCCAAGGATTTTCCCCTATCCCTAACAGACACAAAAGACTGAAGTTATCAAGTGATAGCTTGCCATACCCAGCATGTGATCAAATTGAACCAAAGACACCTAAGAATTCAAATGTTGTCGATTACAGCAATCCATTTGCAATATCTGATTTCCCGGATCGTTTAGAGAATGGAAAACTTGGAAGTGTCACTAAGGACATAGAGGCCCTTATGGCCTGA 2199 0.3779 MHEISLLNGNDTRELFYRKAFNSEDQSSSCVELIPEVLKYVQCLPLAIRVMGSFLCTRDATQWRDVLDRLKTNPNDKIMNVLQISVDVLEYEEKEIFLHIACFFKGERVDYVKRILECCGLHPHIGIPRIIEKSLITIRDQEIHMHDMFQELGKKIVRDQFPEEPGLWNRLWLYEDIHHVLMAKTGTDNVKAIVMNLKEDIFKCEVDGLSKMKNLRLLILYHQNFSGSLNALSHELRYLLWHGYPFASLPSNFTAVNLVELNMPNSSSINLFREGPKDFPCLKRMDLSNSKYLIETPDFSGIPKLERLDLSGCTNLLYVHPSIGLLEKLAFLSLRNCSSLVNIHFGRGSNLSSLIVLHFSGCTKLENMPDFTSATILKYLDFEGCTSLTLVHESIEALFKLTFLSLRDCKNVVSIPNSINTMISLQTLDLCGCLKLTDLPVKQAFKSVSLVSLIFLDIGFCNLLEVPDAIRVLGCLERLNLQGNNFVSLPYGSLSCLPRLAYLNLSHCHELVVRTLPCLPSGGDSSGGRYFKTVSGSRDHRSGLYVFDCPKVTMVSLRKDTELVWFVRLIEEPYHFRCGFDIVVPGYWGNKISRWFGTKFDRGSITRIKNFNMDDNWIGFAFCVVFQRKTKLRILKQRQKKIISLMRGFKHASQDKHLLRTQGFSPIPNRHKRLKLSSDSLPYPACDQIEPKTPKNSNVVDYSNPFAISDFPDRLENGKLGSVTKDIEALMA 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00259 732 Gene3D - 7 90 IPR042197 -
Pumo11g00259 732 Pfam Leucine rich repeat 456 509 IPR001611 GO:0005515
Pumo11g00259 732 Gene3D Ribonuclease Inhibitor 194 345 IPR032675 -
Pumo11g00259 732 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 351 512 IPR044974 GO:0006952
Pumo11g00259 732 SUPERFAMILY L domain-like 209 513 - -
Pumo11g00259 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 100 IPR027417 -
Pumo11g00259 732 Gene3D Ribonuclease Inhibitor 348 444 IPR032675 -
Pumo11g00259 732 Gene3D Ribonuclease Inhibitor 445 559 IPR032675 -
Pumo11g00259 732 PRINTS Disease resistance protein signature 41 55 - -
Pumo11g00259 732 PRINTS Disease resistance protein signature 300 316 - -
Pumo11g00259 732 SUPERFAMILY "Winged helix" DNA-binding domain 76 181 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00259 Pumo-Chr11 9557059 9563937 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00259 349 511 WRKY Transcription Factor Family AT4G12020 33.333 3.80e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00259 - - var:108332841 850.121