Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00258 ATGAGACGGTGGGGTCGTCGATTATCCTCCAATTTCAACCGCTTGGGTCTGGGAAGAAGAAGTATAGCATCCACTTCTTCCAATGACTCCTGCAGCATCCAAAACTATAGATACGATGTATTTATCAGTTTCAGAGGTCCTGACACCCGCAACACTTTTGTTGATCATCTCTACGCTCATCTCATCCGAAAGGGTATTTTCGTCTTTAAGGATGACAAAAGGCTCCACAAAGGAGACTCCATTTCAGCACAACTTCTGCAAGCAATCAAAGATTCACGGGTTTCTATCATCATCTTTTCGGAAAATTATGCTTCCTCCACATGGTGTTTAGATGAAATGGCTGCTATAGCTGATTGCAAACAACAATGGAACCAAACTGTTTTCCCCGTTTTCTACGATGTGGATCCATCTCATGCAAGACATCAGAACGGGGCATACGAGAATGCTTTTGTTTTACACAGATTGAAATTCCAACAACAAGATCCAGACAAGGTCCATCGGTGGGAGAGAGCTATGACGGATTTGGCCAATTTAGCTGGCTGGGATTTCAGGAACAAGGCAGAGTATGAAGAGATTGAAAATATTGTTCAAGCGGTAATAAAAAAATTGGGTCATAAATTTTCAGGATTTGCCGATGACCTTATTGGAATACAACCACGTGTACAAGCATTAGAAAACATTTTAGAATTAAACTCAGAGAATGATGATTTTCATGTTTTAGGAATTTGGGGGATGGGCGGAATAGGAAAGACAACTCATGCTGCTGTCTTGTATGATAAAATCTCTCATAAGTTTGATGCTTGTTGTTTCATTGAGAATGTTAGCAAAATTTACCGGGATGGTGGCCATACTGCTGTACTAGAAACAAATTGTTCGTCAAACTTTAGGAGAAAAAAATCTAGAAATATATAG 912 0.3991 MRRWGRRLSSNFNRLGLGRRSIASTSSNDSCSIQNYRYDVFISFRGPDTRNTFVDHLYAHLIRKGIFVFKDDKRLHKGDSISAQLLQAIKDSRVSIIIFSENYASSTWCLDEMAAIADCKQQWNQTVFPVFYDVDPSHARHQNGAYENAFVLHRLKFQQQDPDKVHRWERAMTDLANLAGWDFRNKAEYEEIENIVQAVIKKLGHKFSGFADDLIGIQPRVQALENILELNSENDDFHVLGIWGMGGIGKTTHAAVLYDKISHKFDACCFIENVSKIYRDGGHTAVLETNCSSNFRRKKSRNI 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00258 303 SMART till_3 37 178 IPR000157 GO:0007165
Pumo11g00258 303 Gene3D - 211 301 IPR027417 -
Pumo11g00258 303 Pfam TIR domain 38 206 IPR000157 GO:0007165
Pumo11g00258 303 Pfam NB-ARC domain 224 278 IPR002182 GO:0043531
Pumo11g00258 303 SUPERFAMILY Toll/Interleukin receptor TIR domain 28 181 IPR035897 -
Pumo11g00258 303 FunFam Disease resistance protein (TIR-NBS-LRR class) 34 205 - -
Pumo11g00258 303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 295 IPR027417 -
Pumo11g00258 303 ProSiteProfiles TIR domain profile. 36 203 IPR000157 GO:0007165
Pumo11g00258 303 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 38 276 IPR044974 GO:0006952
Pumo11g00258 303 Gene3D - 35 210 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00258 Pumo-Chr11 9554515 9556972 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00258 38 288 WRKY Transcription Factor Family AT4G12020 29.365 5.30e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00258 - - gmx:100807905 437.187