Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00257 ATGAAGAGAAAGGCACCCAGTTCTTCCAATTACTCTCACAACATCCAGAACTATAGATATGATGTATTTATCAGTTTCAGAGGTCCTGACACCCGCAACTCTTTTGTTGATCATCTCTATGCCCATTTCACTCGGAAGGGTATTTTCGTCTTTAAGGATGACAAAATGCTCTACAAAGGAGACTCCATTTCAGCACAACTTCTGCAAGCAATCAAAGATTCAAGGGTTTCTATCATCGTCTTTTCGGAAAATTATGCTTCCTCCACATGGTGCTTAGATGAAATGGCTGCTATAGCTGATTGCAAACAACAATCGAACCAAACCGTTTTCCCCGTTTTCTACGATGTGGATCCATCTCATGCAAGACATCAGAATGGGGCATACGAGAATGCTTTTGTTTTACACAGATCGAAATTCCAACAACAAGATCCAGACAAGGTCCATCGGTGGGAGAGAGCTATGACGGATTTGGCCAATTTAGCTGGCTGGGATTTTAGGAACAAGCCAGAGTATGAAGAGATTGAAAATATTGTTCAAGCGGTAATAAAAAAATTGGGACATAAATTTTCAGGATTTGCTGATGACCTTATTGGAATACAACCACGTGCACAAGCATTAGAAAACATTTTAGAATTAAACTCAGAGAATGATGATTTTCATGTTTTAGGAATTTGGGGAATGGGCGGAATAGGAAAGACAACTCATGCTGCTGTCTTGTATGATAAAATCTCTCATAAGTTTGATGCTTGTTGTTTCATTGAGAATGTTAGCAAAATTTATAGGGATGGTGGCCATACTGCTGTACAGAAACAAATTGTTCGTCAAACTTTAGGAGAAAAAAATCTAGAAATATATAGTCCTTTTGAAATATCAGGGATTGTAAGAAATAGGCTACACAACATAAAGGTCCTCATAGTTCTTGACAATGTCGAACAAATAGAGCAATTGCAGGAATTAGCCATAAATCCTAAATTGCTTTTCAAAGGAAGTAGAATAATTATTACCACAAGAGATGAGCATATTCTAAAAGTGTATGAAAAGCATGTAATGCATGAGATTTCATTATTGAATGAAAATGATGCTCGTGAACTGTTTTATAGAAAAGCCTTCAAAAGTGAAGACCAAAGTAGTAGTTGTGTGGAGTTGATTCCCGAGGTATTAAAATATGTCCAATGTCTTCCATTAGCAATTAGAGTAATGGGTTCTTTCTTGTGTACTCGAGATGCTACTCAATGGAGAGATGTTTTGGATAGATTGAAAATAAATCCAAATGATAAAATTATGAATGTACTTCAAATAAGTGTTGATGGACTAGAATATGAGGAAAAAGAAATATTTTTACACATTGTATGTTTCTTTAAAGGGGAGAGGGTGGATTATGTTAAGCGAATTCTAGAATGCTGTGGATTACACCATCACATTGGGATTCAAAGAATCATTGAGAAATCCTTGATAACTATTAGGGATCAAGAAATTCACATGCATGACATGTTTCAGGAATTGGGAAAGAAAATTGTTCGCGACCAATTTCCGGAAGAGCCAGGACTATGGAATAGATTATGGCTTTATGAAGATATCCATCACGTCTTAATGGCGAAAACGGAAACAAATAATGTTAAAGCCATAGTTCTGAATCTAAAAGAAGATATCTTCAAATGTGAGGTTGATGGATTGTGA 1677 0.3626 MKRKAPSSSNYSHNIQNYRYDVFISFRGPDTRNSFVDHLYAHFTRKGIFVFKDDKMLYKGDSISAQLLQAIKDSRVSIIVFSENYASSTWCLDEMAAIADCKQQSNQTVFPVFYDVDPSHARHQNGAYENAFVLHRSKFQQQDPDKVHRWERAMTDLANLAGWDFRNKPEYEEIENIVQAVIKKLGHKFSGFADDLIGIQPRAQALENILELNSENDDFHVLGIWGMGGIGKTTHAAVLYDKISHKFDACCFIENVSKIYRDGGHTAVQKQIVRQTLGEKNLEIYSPFEISGIVRNRLHNIKVLIVLDNVEQIEQLQELAINPKLLFKGSRIIITTRDEHILKVYEKHVMHEISLLNENDARELFYRKAFKSEDQSSSCVELIPEVLKYVQCLPLAIRVMGSFLCTRDATQWRDVLDRLKINPNDKIMNVLQISVDGLEYEEKEIFLHIVCFFKGERVDYVKRILECCGLHHHIGIQRIIEKSLITIRDQEIHMHDMFQELGKKIVRDQFPEEPGLWNRLWLYEDIHHVLMAKTETNNVKAIVLNLKEDIFKCEVDGL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00257 558 SMART till_3 19 160 IPR000157 GO:0007165
Pumo11g00257 558 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 163 IPR035897 -
Pumo11g00257 558 SUPERFAMILY "Winged helix" DNA-binding domain 425 530 IPR036390 -
Pumo11g00257 558 ProSiteProfiles TIR domain profile. 18 185 IPR000157 GO:0007165
Pumo11g00257 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 449 IPR027417 -
Pumo11g00257 558 Gene3D - 14 190 IPR035897 -
Pumo11g00257 558 PRINTS Disease resistance protein signature 390 404 - -
Pumo11g00257 558 PRINTS Disease resistance protein signature 297 311 - -
Pumo11g00257 558 PRINTS Disease resistance protein signature 221 236 - -
Pumo11g00257 558 Pfam NB-ARC domain 204 434 IPR002182 GO:0043531
Pumo11g00257 558 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 546 IPR044974 GO:0006952
Pumo11g00257 558 Gene3D - 355 439 IPR042197 -
Pumo11g00257 558 Pfam TIR domain 20 188 IPR000157 GO:0007165
Pumo11g00257 558 Gene3D - 194 351 IPR027417 -
Pumo11g00257 558 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00257 Pumo-Chr11 9541543 9544130 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00257 20 549 WRKY Transcription Factor Family AT4G12020 28.096 3.45e-49 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00257 - - gmx:100807905 860.136