Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00248 ATGGAAGATGATTATGTTGAGTACGTGCCCGTTGCCAAAAGGCGGGTCTTGAAGGATCAGAACTTTGTTCAATGGAAACGGAAGCCTTCTTTTTCTGTCAGCGATGGTGGTGGTGATTCGAAGAAACTCAGACCCAGTCTTCTAGAGAAGGCATCACTGTTGAAATCGAAACAAGAACAACAGCAACCCGAGATTATTAGTGTGAGAGAACAGTTACTTCAACAGGAGAAGGAGATTTTGCAGAATTTGTCTCATCATGCAAAAGCTCTCATGTCGGTTCGAGAATTGGGGAAGGGGGTCACTTATACCGAACCTATGCTTACAGGGTGGAAGCCCCCTCTGAAAGTTCTAAGCTTGTCTCAGAAAGAACGTGCCTTGATTAGAAGCCGGTTTCATATAGCAGTTGATGGTGATGATGAAGAAGATATTCCGCCCCCAATTCAGAATTTCAAGGATATGAGGTTTCCTGAGCCGGTTTTGAAGAAGTTGGAAGCAAAGGGGATTGTGCAACCGACTCCGATACAGGTGCAAGGCCTTCCTGTTGTTCTATCCGGCCGAGATATGATCGGGATTTCGTCCACCGGATCGGGAAAGACCCTCGTCTTTGTGCTTCCCATGATCATGGTGGCAATGCAGGAGGAGTTTATGATGCCTATTGTTCCAAGAGAAGGTCCATTCGGGTTGATTATTTGTCCATCCAGGGAACTAGCAAAACAGACTCATGAACTGGTTGAGCAGTTCTTGGTACCTTTGAAGGAAGCCGGGTATCCGTTGCTCAGGTCCATGATTTGTACTGGTGGAGTCAATATGAGATCACAGATGGAGGTTGTGAAGAAGAAGGGTGTTCATGTTGTTGTTGCTACTCCTGGGAGATTGAAGGATGTGTTGGCTAAGAAGAAAATGAACCTTGATAACTGCAGGTATGTGACGTTAGATGAGGCGGATCGATTGCTAGATGTGGGGTTTGAAGATGACATAGGAGAAGTCTTTGATCACTTCAAAGATCAAAGGCAGACTCTTTTGTTTTCAGCTACCATGCCAACCAAGGTTCAGAACTTTGCTAGAACTGCTTTGGTGAAACCTGTTGTTGTCAATGTGGGAAGTCATGCAGGGGCAGCAGTGAATGCCAATGTTAAGCAAGAGGTACAGTATGTGAAGCAAGAGGCGAAATTGGTTTACCTTCTTGGCTGTTTGCAGAAAACGCCACCACCTGTTATAGTGTTTTCTGAGAACAAGGCTGATGTCGACCGCGTTCATGAGTATCTTCTCTTGAAAGGAGTGGAAGCTGTGGCTGTTCATGGAGGCAAGGATCAAGAAGACAGAGAGTATGCCATTGAAGCTTTTAAGGCCAGAAAGAAAGACGTGCTGGTTGCAACCGATGTTGCATCCAAAGGATTGGATTTTCCGGATATTCAGCATGTCATTAACTATGACATGCCGGCTGAGATCGAAAACTATGTCCATCGAATCGGAAGAACGGGAAGATCCGGCAAGAGTGGTACAGCGACAACGTTCGTAAACAGCAGTCAAAGTGAGGCAGCATTGCTTGATCTGAAACACCTCTTGCTAGAAGCAAAGCAAAGGATCCCCCCATTTCTGGCTGTGCTGAATGATCCAATGTTCGCAGACATAAGTGGCGTCAAGGGATGTTCATTCTGTGGCGGGCTTGGTCATCGCATACGTGATTGTTCTAAATTTGAACGTCAGCGGAGCATGGTCACTGCAAATAGAAAGGATTACGTTGGATCTGGAGGTTATCGAGGGGAAATATAA 1773 0.458 MEDDYVEYVPVAKRRVLKDQNFVQWKRKPSFSVSDGGGDSKKLRPSLLEKASLLKSKQEQQQPEIISVREQLLQQEKEILQNLSHHAKALMSVRELGKGVTYTEPMLTGWKPPLKVLSLSQKERALIRSRFHIAVDGDDEEDIPPPIQNFKDMRFPEPVLKKLEAKGIVQPTPIQVQGLPVVLSGRDMIGISSTGSGKTLVFVLPMIMVAMQEEFMMPIVPREGPFGLIICPSRELAKQTHELVEQFLVPLKEAGYPLLRSMICTGGVNMRSQMEVVKKKGVHVVVATPGRLKDVLAKKKMNLDNCRYVTLDEADRLLDVGFEDDIGEVFDHFKDQRQTLLFSATMPTKVQNFARTALVKPVVVNVGSHAGAAVNANVKQEVQYVKQEAKLVYLLGCLQKTPPPVIVFSENKADVDRVHEYLLLKGVEAVAVHGGKDQEDREYAIEAFKARKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRSGKSGTATTFVNSSQSEAALLDLKHLLLEAKQRIPPFLAVLNDPMFADISGVKGCSFCGGLGHRIRDCSKFERQRSMVTANRKDYVGSGGYRGEI 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00248 590 Gene3D - 376 537 IPR027417 -
Pumo11g00248 590 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 179 364 IPR014001 -
Pumo11g00248 590 Pfam Helicase conserved C-terminal domain 390 497 IPR001650 -
Pumo11g00248 590 Gene3D - 114 368 IPR027417 -
Pumo11g00248 590 Pfam DEAD/DEAH box helicase 172 352 IPR011545 GO:0003676|GO:0005524
Pumo11g00248 590 SMART ultradead3 167 381 IPR014001 -
Pumo11g00248 590 FunFam Probable ATP-dependent RNA helicase DDX41 376 538 - -
Pumo11g00248 590 FunFam Probable ATP-dependent RNA helicase DDX41 113 365 - -
Pumo11g00248 590 CDD SF2_C_DEAD 378 506 - -
Pumo11g00248 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 510 IPR027417 -
Pumo11g00248 590 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 98 534 - -
Pumo11g00248 590 SMART helicmild6 416 497 IPR001650 -
Pumo11g00248 590 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 377 537 IPR001650 -
Pumo11g00248 590 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 148 176 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00248 Pumo-Chr11 8459527 8461299 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00248 148 529 Eukaryotic Initiation Factors Gene Family AT3G13920 30.729 1.51e-50 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00248 K13116 - gmx:100819984 861.292