Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00244 ATGGAAGATGATTATGTTGAGTACGTGCCCGTTGCCAAAAGGCGGGTCTTGAAGGATCAGAACTTTGTTCAATGGAAACGGAAGCCTTCTTTTTCTGTCAACGATGGTGGTGGTGATTCGAAGAAACTCAGACCCAGTCTTCTAGAGAAGGCATCACTGTTGAAATCGAAACAAGAACAACAGCAACCCGAGATTATTAGTGTGAGAGAACAGTTACTTCAACAGGAGAAGGAGATTTTGCAGAATTTGTCTCATCATGCAAAAGCTCTCATGTCGGTTCGAGAATTGGCGAAGGGGGTCACTTATACCAAACCTATGCTTACAGGGTGGAAGCCCCCTCTGAAAGTTCTAAGCTTGTCTCAGAAAGAACGTGCCTTGAATAGAAGCCGGTTTCATATAGCAGTTGATGGTGATGATGAAGATGATATTCCGCCCCCAATTCAGAATTTCAAGGATATGAGGTTTCCTGAGCCGGTTTTGAAGAAGTTGGAAGCAAAGGGGATTGTGCAACCGACTCCGATACAGGTGCAAGGCCTTCCTGTTGTTCTATCCGGCCGAGATATGATCGGGATTTCGTCCACCGGATCGGGAAAGACCCTCGTCTTTGTGCTTCCCATGATCATGGTGGCAATGCAGGAGGAGCTTATGATGCCTATTGTTCCCGGAGAAGGTCCATTCGGGTTGGTTATTTGTCCATCCAGGGAACTAGCAAAACAGACTCATGAACTGGTTGAGCAGTTCTTGGTACCTTTGAAGGAAGCCGGGTATCCGTTGCTCAGGTCCATGATTTGTACTGGTGGAGTCAATATGAGATCACAGATGGAGGTTGTGAAGAATAAGGGTGTTCATGTTGTTGTTGCTACTCCTGGGAGATTGAAGGATGTGTTGGCTAAGAAGAAAATGAACCTTGATAACTGCAGATATGTGATGTTAGATGAGGCGGATCGATTGCTAGACGTGGGGTTTGAAGATGACATAGGAGAAGTCTTTGATCACTTCAAAGATCAAAGGCAGACTCTTTTGTTTTCAGCTACCATGCCAACCAAGGTTCAGAACTTTGCTAAAACTGCTTTGGTGAAACCTGTTGTTGTCAATGTGGGAAGTCATGCAGGGGCAGCAGTGAATGGCAATGTTAAGCAAGAGGTACAGTATGTGAAGCAAGAGGCGAAATTGGTTTACCTTCTTGGCTGTTTGCAGAAAACGCCACCACCTGTTATAGTGTTTTCTGAGAACAAGGCTGATGTCGACCGCGTTCACGAGTATCTTCTCTTGAAAGGAGTGGAAGCTGTGGCTGTTCATGGAGGCAAGGATCAAGAAGACAGAGAGTATGCCATTGCAGCTTTCAAGGCCGGAGAGAAAGACGTGCTGGTTGCAACCGATGTTGCATCCAAAGGATTGGATTTTCAGGATATTCAGCATGTCATTAACTATGACATGCCGGCTGAGATCGAAAACTTTGTCCATCGAATCGGAAGAACGGGAAGATCCGGCAAGAGTGGTACAGCGACAACGTTCGTAAACAGCAGTCAAAGTGAGGCAGCATTGCTTGATCTGAAACACCTCTTGCTAGAAGCAAAGCAAAGGATCCCCCCATTTCTGGCTGTGCTGAATGATCCAATGTTCGCAGACATAAGTGGCGTCAAGGGATGTTCATTCTGTGGCGGGCTTGGTCATCACATACGTGATTGTTCTAAATTTGAACGTCAGCGGAGCATGGTCACTGCAAATAGAAAGGATTACTTTGGATCTGGAGGTTATCGAGGGGAAATATAA 1773 0.4585 MEDDYVEYVPVAKRRVLKDQNFVQWKRKPSFSVNDGGGDSKKLRPSLLEKASLLKSKQEQQQPEIISVREQLLQQEKEILQNLSHHAKALMSVRELAKGVTYTKPMLTGWKPPLKVLSLSQKERALNRSRFHIAVDGDDEDDIPPPIQNFKDMRFPEPVLKKLEAKGIVQPTPIQVQGLPVVLSGRDMIGISSTGSGKTLVFVLPMIMVAMQEELMMPIVPGEGPFGLVICPSRELAKQTHELVEQFLVPLKEAGYPLLRSMICTGGVNMRSQMEVVKNKGVHVVVATPGRLKDVLAKKKMNLDNCRYVMLDEADRLLDVGFEDDIGEVFDHFKDQRQTLLFSATMPTKVQNFAKTALVKPVVVNVGSHAGAAVNGNVKQEVQYVKQEAKLVYLLGCLQKTPPPVIVFSENKADVDRVHEYLLLKGVEAVAVHGGKDQEDREYAIAAFKAGEKDVLVATDVASKGLDFQDIQHVINYDMPAEIENFVHRIGRTGRSGKSGTATTFVNSSQSEAALLDLKHLLLEAKQRIPPFLAVLNDPMFADISGVKGCSFCGGLGHHIRDCSKFERQRSMVTANRKDYFGSGGYRGEI 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00244 590 Gene3D - 376 537 IPR027417 -
Pumo11g00244 590 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 310 318 IPR000629 -
Pumo11g00244 590 SMART ultradead3 167 381 IPR014001 -
Pumo11g00244 590 CDD SF2_C_DEAD 378 506 - -
Pumo11g00244 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 510 IPR027417 -
Pumo11g00244 590 FunFam Probable ATP-dependent RNA helicase DDX41 376 538 - -
Pumo11g00244 590 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 377 537 IPR001650 -
Pumo11g00244 590 FunFam Probable ATP-dependent RNA helicase DDX41 113 365 - -
Pumo11g00244 590 Gene3D - 114 368 IPR027417 -
Pumo11g00244 590 Pfam Helicase conserved C-terminal domain 390 497 IPR001650 -
Pumo11g00244 590 SMART helicmild6 416 497 IPR001650 -
Pumo11g00244 590 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 107 534 - -
Pumo11g00244 590 Pfam DEAD/DEAH box helicase 172 352 IPR011545 GO:0003676|GO:0005524
Pumo11g00244 590 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 179 364 IPR014001 -
Pumo11g00244 590 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 148 176 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00244 Pumo-Chr11 8114211 8115983 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00244 135 529 Eukaryotic Initiation Factors Gene Family AT3G13920 30.175 4.69e-53 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00244 K13116 - gmx:100819984 857.825