Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00232 ATGGATAGTGAAATTGTTGGGAGCATTAACATGGCCGATGTCACAGTTGATGCAATGAGTTTTACTTGGGTAGTGGACAACGCAATAAGGAGTAGGAGTTCGTCAAATTTGGGATCAGCATCAATATCCCGTGTTCAAAGTTTTGCTTCGGTAGTGTACAGTGCCATAAGGAGTAGGACTCCATCAAATCTGGGAACATCCTCTGAGCATGATTTTGCTTCAGCAGAGGACATGATGAGGACTATAACTGTAGCAGCCACCAACGATTTCTCACTTGACAACAAAATTGGTTCTGGAAGCTTTGGTGTTTTGTACAGAGCCAAACTTGTTGATGGTCGTGAGGTTGCAATCAAGAGGGGTGTGTCAAAGAGAAATGGTTCATTTAAGTCTAAATTGGCCTTCTTGTCTCGAATACACCACAAACACTTGGTTGGACTAGTTGGGCTCTGTGAAGAGAAAGATGAGTGGCTCTTGGTGCATGAGTACATGAAGAATGGATCCTTGCATGATCATTTGCATCACAATAACAATGTTAACAAGGGTAGCAGTGTGTTGAATTCATGGAAAATGAGGATCAAAATTGCTTTGGATGCTTCCAGAGGAATAAAATATCTTCACAACTATGTAATTCCATCCACTATTCACGGAGATGTCAAGTCTTCCAACATTCTTCTTGATGCCTCTTGGACGGCAAGAGTATCTGATTTTGGATTGAAATTTATGAAGAACTCTGCAGGAACTGTTGGATATATTGATCCTAAATACTATGGTCTAAATGAGTACACAGCAAAGAGTGATGTGTATGGGCTTGGAGTTGTACTGCTTGAACTTTTAACGGGAAAGAGAGCTACATTCAAGTATGGGGAAGATGAAGGCACCCCTTTAAGTGTGGTGGACTTTGCAGTGTCTGCTATTTTGGCTGGAGATTTGGACAAAATTTTGGATCCAAGGGTTGGACCACCCAATGTGAATGAAGCAGAGGCAGTGGAGTTAGTGGCCTGTGCTGCTATGCTTTGTGTGAATTTGGAAGGGAAAGATAGACCAACCATGGTTGACATTGTGGTTAATTTGGAGCGGGCTTTGGCTATGTGTTGTAATAATAGGCAATGTTACCAAACGCGCGTCAAGCATCGATTTGGTCAAGATATTGATTGGGTCAATGAATTGGGAAAAATTCAAGTCTCACATCGACCAGAGATAGTACCAAGATAA 1212 0.4175 MDSEIVGSINMADVTVDAMSFTWVVDNAIRSRSSSNLGSASISRVQSFASVVYSAIRSRTPSNLGTSSEHDFASAEDMMRTITVAATNDFSLDNKIGSGSFGVLYRAKLVDGREVAIKRGVSKRNGSFKSKLAFLSRIHHKHLVGLVGLCEEKDEWLLVHEYMKNGSLHDHLHHNNNVNKGSSVLNSWKMRIKIALDASRGIKYLHNYVIPSTIHGDVKSSNILLDASWTARVSDFGLKFMKNSAGTVGYIDPKYYGLNEYTAKSDVYGLGVVLLELLTGKRATFKYGEDEGTPLSVVDFAVSAILAGDLDKILDPRVGPPNVNEAEAVELVACAAMLCVNLEGKDRPTMVDIVVNLERALAMCCNNRQCYQTRVKHRFGQDIDWVNELGKIQVSHRPEIVPR 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00232 403 Gene3D Phosphorylase Kinase; domain 1 57 162 - -
Pumo11g00232 403 ProSitePatterns Protein kinases ATP-binding region signature. 96 118 IPR017441 GO:0005524
Pumo11g00232 403 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 84 368 IPR044815 GO:0004674
Pumo11g00232 403 SUPERFAMILY Protein kinase-like (PK-like) 79 357 IPR011009 -
Pumo11g00232 403 ProSiteProfiles Protein kinase domain profile. 90 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00232 403 Pfam Protein kinase domain 91 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00232 403 Gene3D Transferase(Phosphotransferase) domain 1 163 380 - -
Pumo11g00232 403 SMART serkin_6 90 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00232 Pumo-Chr11 7129557 7130768 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00232 65 364 Receptor kinase-like Gene Family AT3G55950 60.856 4.10e-118 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Pumo11g00232 Pkinase 1.3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00232 - - gmx:100805573 413.305