Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00223 ATGGCATCTTCTTCTTCGAACCCACCATGTGCGGCGTGCAAGTTCCTGAGGAGAAAGTGCCAACCCGAGTGCGTGTTCGCGCCATACTTCCCACCGGACAACCCTCAGAAATTCATCAACGTGCATAGAATCTTCGGTGCCAGCAACGTCTCAAAGCTTCTCAACGAATTGCACCCTCACCAGCGCGAAGACGCGGTGAATTCGCTGGCCTACGAGGCCGAGATGCGCCTCCGGGACCCTGTTAATGGGTGTGTTGGAATCATCTCTCTTCTTCACCAGCAGCTGCGCCAGCTCCAGATGGACCTCCAGAGCACCAAGTTTGAGCTCTCGAGGATCCAAAATCTGGGCGTGACCATACCCACTGGATATAGTGAATATGGTTATGCTGCTGCTGCGGTTACCACACCTATCAGCGCCATTCATATGAATGGCGCTGATGGTGGCTATGGTAACCGCTATTACAACCAACAACATCATTATCATCAGTGTGGGCCACAGCAGCTAGTTAGGAACTTTGGTGCAGGGAACAACAACTGTGATGAGGCCAATCATGTGTTGGCCATGAACATTGCTAGTTTTGGGCCATTGAGTCAGCTTCAGCAGCCTAGTGCTGCTGCTGTTGCTCGTGATGACCCTCACACTACTAGGGTTCATCCCTCTTAG 663 0.5219 MASSSSNPPCAACKFLRRKCQPECVFAPYFPPDNPQKFINVHRIFGASNVSKLLNELHPHQREDAVNSLAYEAEMRLRDPVNGCVGIISLLHQQLRQLQMDLQSTKFELSRIQNLGVTIPTGYSEYGYAAAAVTTPISAIHMNGADGGYGNRYYNQQHHYHQCGPQQLVRNFGAGNNNCDEANHVLAMNIASFGPLSQLQQPSAAAVARDDPHTTRVHPS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00223 220 Pfam Lateral organ boundaries (LOB) domain 9 105 IPR004883 -
Pumo11g00223 220 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Pumo11g00223 220 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00223 Pumo-Chr11 6606434 6607096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00223 1 220 AS2 family AT1G65620 54.667 5.52e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo11g00223 LOB 2.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00223 - - gmx:100801155 375.941