Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00215 ATGTCCACGGCGGCTCCGCCACCCTCCGCCGTGGCCGCCACCACCGGCGTGGGCCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTGGTCCTCATCTCCACCATCATGCTCGCCTCCTACGCCTGCGTCCGTATCAAGGCCATCGGTACTCGCCGCCACAACACCAGCATAAGAGATAATAACAGTTTTCACGACACCTCCGATGGGCCCGTGGCGGCCGTGGTCCTGGGCCTGGAGAAGCCCGCCATCGAGGCCTGCTACGGGCCCAAGATCGTGATTGGAGAGAGCAAGCGCCTGCCCAGGCCCAACGAGGGCCCCTGCGCCATATGCTTGAGTGAGTATCTCCCCAAAGAGACCATACGGTGCGTTCCGGAGTGCCGCCACTGCTTCCACGCCGAGTGCGTCGACGAGTGGCTCAAAACGAGCGCCACGTGTCCCCTCTGCCGGAACTCCCCCGCGCCGTCGCCGGCGGCTACGCCGCTGTCGGAGCTCGTTCCGCTGGCTTTTCACGCCAGGTGA 522 0.6552 MSTAAPPPSAVAATTGVGLGYGIAIAVSILVLISTIMLASYACVRIKAIGTRRHNTSIRDNNSFHDTSDGPVAAVVLGLEKPAIEACYGPKIVIGESKRLPRPNEGPCAICLSEYLPKETIRCVPECRHCFHAECVDEWLKTSATCPLCRNSPAPSPAATPLSELVPLAFHAR 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00215 173 PANTHER RING-H2 FINGER PROTEIN ATL67 9 171 IPR044289 GO:0016567|GO:0016740
Pumo11g00215 173 CDD RING-H2_EL5-like 108 150 - -
Pumo11g00215 173 SUPERFAMILY RING/U-box 103 156 - -
Pumo11g00215 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 155 IPR013083 -
Pumo11g00215 173 Pfam Ring finger domain 108 150 IPR001841 -
Pumo11g00215 173 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Pumo11g00215 173 SMART ring_2 108 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00215 Pumo-Chr11 6449721 6450293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00215 1 173 C3H Transcription Factor Family AT5G07040 61.143 3.67e-67 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00215 - - gmx:100803286 278.485