Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00205 ATGAACAAGCAAGCAAACCCTACTTACCTACCTATCAATCAGAGTAATCGGAAAATGCCTCCGAGGAAGAAGAAACCCAATCTTCAACAACAGCCTTCCAAGTTCGGCATCCAGCACTTCTTCGATCGCGCCTCTCAGAAGCAGCAGCAGCAGCAGCACCCCCTCCAACCCCACACCATCCCCAACACCAACACCAACACCAACACCAACAATGCACCACCAGAACAACCTTACGAGGTGTCTCCCCAAACGCGCTTCAAATTCTCACCTGGGATGTTGGTGAAGCAGAGCCAGGATGAGGTGGTCGACGAGGTTACCTGGAAGATATCTCCCGTCAACGAGAGGCTCCAGGCCGTTTCCAAACACACGCCGGAAGTGATTCAAGCCTTGGCTGCCTCTTCCAAAATCAACTTGTCTCCAATTCGCAACAGTCATGGCAACAAGGAGACTTGTCTGGATAAGGTTATTACTTCGCCGACTCCCAAGGTGCCATTGAGCTTCAAAAGGATAAACTCGGCCCGTGATGTGAGTGGACAGAGCCCCTTCAGAACTCCACCATCTATGTCTTGTCGCCCCGACAAGGTGCAACGTGTCAAGGATATTGAACACATTGGACCGTGTGACCAACTTTTATTAAGGCAGAACAAAAAGGCATTGCTTGAACTGTTAGATCAAGTTGAAGATGCCATTGCTGTTGATGATGCTACAGTTAGTAATAACAACACTTATTCCTTTAAAGTACCTCAAGATCAAATTGCTAATGAGCTCCCTGTCAAAGTCAACCCTGCAGTAGAAAGGACCAAATCACATATACCTAAAGAGGTTGTTGATGTCTTCTCCAATTCGAATTATTTGGTTTTGGAGGTATCTGAACTTAGGTCTGCTGATTCATCTGCTGCTCAATGCTCATACAAGGTGCTTCGTTTGCTAAATGAACAAACTGGAGAAGAGCGGGCTTTAAACTTACAGAATGAGTGGTCTGATAGTGTAATTGCACCTGGAGATACTGTGCACGTAATCGGTGAATTCGACCAAGGGGGAAATTGTGATATTGATCACAATAAAAACTTTTTGATTGTACACCCAGATATTCTAGTGTCTGGAACACGGGTTGCTGCCAGTTTTAGTTGCCCAAGGAGAACTGTCTTAGACGAGAGGCTAAAAAACAATGATTACTCAACTGCAGCATTAACTGGAACCCTGCTGCACCAAATTTTTCAGGCTGGGCTTACGAATGACAATCCTACAGTAAATTTCATGGAAGATTATGCAGAAGTGGTATTACTGAGAAACATTGAAAGCTTGTATGCATGTGGAGTAAATGAAAATGATGTTCGCAAAACCTTGAGAGATGCTATCCCTAGAATATTGAGTTGGATCATGCAGTTCAAAAATATGAAGGAAAGACAAGACCCCAGTGTCAATTTTGGATTTGATGATGGGCCAAAGAATGTTGGCATATCCGAGGTAATTGATATTGAAGAGATGGCTTGGGCTCCAAAATATGGTTTGAAAGGGATGATTGATGCTTCGGTTAGAGTGAAATTTCAATCACAAAATGATGAACCGGAGGAAAAGATCATGCCAGTAGAGTTCAAAACTGGAAAAACACCAAACAGCCAGTCATCAGTAGAACATAGGGCCCAAGTAATTTTGTACACTCTGCTGATGTCTGAAAGGTATCAGAAGGCTGTTGATTCTGGTCTTCTATATTATCTCCAGTCCGACCAGACACAGGGCATTGTGGTTCAAAGATCTGACTTAACTGGGCTTATAATGCGACGAAATGAACTAGCAAGTGATATTCTTAAGGCATTAACTTTGCAACAACTGCCTCCAATGTTACTGAGTCCTAGCATTTGCAGAGGTTGTCGCCATCTTAATGTGTGTAGCATTTATCATAAGGCACATGGTGGAAGCACAGGGAGCAGTGGGTTGGGAGAAGTTTTTGATTCTCTTACTAATCACATGACATCTTCGCATTCTAAGTTTCTCTGCCATTGGGATCGCTTGATTGACTTAGAAGCTACAGAGACTGAGCTTTTAAAGAAAGGGGTGTGGCAATCACATAGTTTAAAGAGTCCAAACAGTGGTGGCCTTTCTTCTATTGTTCTTGATGCTTCACAAGGAATACCTCATCAGAAATCTCTCGAAGATAATAAATTCATTTATCATTTCATACAACAAGATTCTTCTTCTAGCCTCTCTGGAGTTTCTGATGCATCTTCTAGTGCCTCGTTGAAAAATGATTTAGATTTCACACTTCGAAGTGGAGATCATGTGATACTGAGTAATCAATCTAGCCATCAAATTATTGCTAGAGGGGTGATATCTGATATTAGTCCGATCCATGTATCAGTTTCCTTTTCTAAGCGTGTACGAATTCCTGGGAGTTCTTCCACTGCACATGATCTCATTCAGCAGGTTTGGAGAATTGACAAGGATGAAGCTGTGACTTCATTTGCAATTATGAGGTTTAATCTTGTACAACTTTTTCTACAAAATGATCAAAGTGCTCATCTGCGGAGGATGATTGTTGATCTTGAGGCTCCTAGATTTGACAGTGGATCTATAGTTAGTCAGGATCCAGCGATATCCTATGTTTGGTCAGAGAAGAGTTTGAATGATGACCAACGTAGAGCAATTCTCAAGATACTTACAGCAAAAGATTATGCACTTATATTAGGGATGCCTGGAACAGGGAAAACGTCCACATTGGTCCATGCTGTGAAAGCCTTGTTGATTAGAGGGACATCCATTTTGCTAACCGCTTATACAAATTCTGCTGTTGATAATTTACTCATCAAATTAAAAGCACGGGGGATTGATTTTGTACGAATTGGAAGACATGAAGTAGTGAATGAGGAGGTCAAAGAACACTGCCTCTCAGCAACAAATGTACAAGGTGTTGAAGATATCAAAATAAGGTTGGAACAAGTCAATGTTGTTGCAGTTACTTGTCTCGGCATTTCTAGTCCCTTGCTTGCCAACACGAGGTTTGATGTATGCATTATGGATGAAGCTGGACAGACAACTCTACCAGTGTCCTTGGGCCCTCTAACATTTGCTTCGAAGTTTGTACTTGTTGGGGATCATTATCAACTGCCACCACTTGTCCAGAGTGCAGAGGCCCGAGAGAATGGCATGGGAATAAGTTTGTTCTGTAGGCTCTCAGAAGCACATCCAGAGGCTATTTTAGCTTTGCAGAGTCAGTATCGAATGTGTCAGGACATTATGGACCTTTCAAATGCCTTGATATATGGTGACAGATTGAGGTGTGGTTCATTAGAGGTAGCTAATGCAAAACTTGAGTTTTCAGGCTTAAACTGTGATTTGCCTTGGCTAGAAGATGTTTTGAATCCTCGAAGACCTGTTATATTTATTGACACTGACAAGTTGCCTGCTTTAGAGGCAAGAGATCAGAAGATTGTAAATAACCCTATTGAAGCTCAAATAATTGCTGAGGTTGCAAGGGAATTGGTAAAAAATGGAATCGGAGGAGAACACATTGGCATTATTACTCCCTATAATTCACAGGCAAACCTCATCCGGAATGCTGCTTCCATGACTTCCTTGGAGATACATACCATTGACAAATACCAGGGTAGAGATAAAGACTGTATATTAGTATCTTTTGTAAGGTCTACCGAAAACCCGACAAGCTGTGCTGCTTCTCTGCTTGGAGACTGGCACAGGATAAATGTGGCTCTTACTCGTGCTAAGAAAAAGTTGATCATGGTAGGGTCTCGGAGAACTCTATTAAAGGTTCCTCTACTGAAGCTTCTCATTAAGAAGGTTGAGGAGCAATCTGGAATTTTAACTGTGACTAAGAAGGATATCTATCGAAAAAGTGAGCTCAAGAGATGTTCTCAAATGAGATGA 3882 0.4209 MNKQANPTYLPINQSNRKMPPRKKKPNLQQQPSKFGIQHFFDRASQKQQQQQHPLQPHTIPNTNTNTNTNNAPPEQPYEVSPQTRFKFSPGMLVKQSQDEVVDEVTWKISPVNERLQAVSKHTPEVIQALAASSKINLSPIRNSHGNKETCLDKVITSPTPKVPLSFKRINSARDVSGQSPFRTPPSMSCRPDKVQRVKDIEHIGPCDQLLLRQNKKALLELLDQVEDAIAVDDATVSNNNTYSFKVPQDQIANELPVKVNPAVERTKSHIPKEVVDVFSNSNYLVLEVSELRSADSSAAQCSYKVLRLLNEQTGEERALNLQNEWSDSVIAPGDTVHVIGEFDQGGNCDIDHNKNFLIVHPDILVSGTRVAASFSCPRRTVLDERLKNNDYSTAALTGTLLHQIFQAGLTNDNPTVNFMEDYAEVVLLRNIESLYACGVNENDVRKTLRDAIPRILSWIMQFKNMKERQDPSVNFGFDDGPKNVGISEVIDIEEMAWAPKYGLKGMIDASVRVKFQSQNDEPEEKIMPVEFKTGKTPNSQSSVEHRAQVILYTLLMSERYQKAVDSGLLYYLQSDQTQGIVVQRSDLTGLIMRRNELASDILKALTLQQLPPMLLSPSICRGCRHLNVCSIYHKAHGGSTGSSGLGEVFDSLTNHMTSSHSKFLCHWDRLIDLEATETELLKKGVWQSHSLKSPNSGGLSSIVLDASQGIPHQKSLEDNKFIYHFIQQDSSSSLSGVSDASSSASLKNDLDFTLRSGDHVILSNQSSHQIIARGVISDISPIHVSVSFSKRVRIPGSSSTAHDLIQQVWRIDKDEAVTSFAIMRFNLVQLFLQNDQSAHLRRMIVDLEAPRFDSGSIVSQDPAISYVWSEKSLNDDQRRAILKILTAKDYALILGMPGTGKTSTLVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKARGIDFVRIGRHEVVNEEVKEHCLSATNVQGVEDIKIRLEQVNVVAVTCLGISSPLLANTRFDVCIMDEAGQTTLPVSLGPLTFASKFVLVGDHYQLPPLVQSAEARENGMGISLFCRLSEAHPEAILALQSQYRMCQDIMDLSNALIYGDRLRCGSLEVANAKLEFSGLNCDLPWLEDVLNPRRPVIFIDTDKLPALEARDQKIVNNPIEAQIIAEVARELVKNGIGGEHIGIITPYNSQANLIRNAASMTSLEIHTIDKYQGRDKDCILVSFVRSTENPTSCAASLLGDWHRINVALTRAKKKLIMVGSRRTLLKVPLLKLLIKKVEEQSGILTVTKKDIYRKSELKRCSQMR 1293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00205 1293 FunFam DNA replication helicase 1072 1285 - -
Pumo11g00205 1293 MobiDBLite consensus disorder prediction 1 15 - -
Pumo11g00205 1293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 873 1259 IPR027417 -
Pumo11g00205 1293 MobiDBLite consensus disorder prediction 44 82 - -
Pumo11g00205 1293 MobiDBLite consensus disorder prediction 1 32 - -
Pumo11g00205 1293 CDD DNA2_N-like 367 602 - -
Pumo11g00205 1293 CDD DEXXQc_DNA2 873 1073 IPR026851 GO:0017116
Pumo11g00205 1293 CDD SF1_C_Upf1 1074 1252 IPR047187 -
Pumo11g00205 1293 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 816 965 - -
Pumo11g00205 1293 PANTHER DNA2/NAM7 HELICASE FAMILY 36 1268 IPR045055 -
Pumo11g00205 1293 MobiDBLite consensus disorder prediction 44 78 - -
Pumo11g00205 1293 Pfam DNA replication factor Dna2 312 514 IPR014808 -
Pumo11g00205 1293 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 970 1071 - -
Pumo11g00205 1293 Pfam Domain of unknown function DUF83 524 631 IPR022765 -
Pumo11g00205 1293 Gene3D - 804 971 IPR027417 -
Pumo11g00205 1293 Gene3D - 972 1071 IPR027417 -
Pumo11g00205 1293 Gene3D - 367 631 IPR011604 -
Pumo11g00205 1293 FunFam DNA replication helicase Dna2 478 631 - -
Pumo11g00205 1293 Pfam AAA domain 977 1041 IPR041677 GO:0004386
Pumo11g00205 1293 Pfam AAA domain 874 964 IPR041677 GO:0004386
Pumo11g00205 1293 Pfam AAA domain 1051 1250 IPR041679 -
Pumo11g00205 1293 Gene3D - 1072 1280 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00205 Pumo-Chr11 6304649 6319622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00205 19 1015 Core DNA Replication Machinery Family AT1G08840 54.872 0.0 1083
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00205 K10742 - gmx:100799415 2220.28