Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00198 ATGGCATCATCACACGTTTTGGAAGGTTGTCCCTCTAAAGCCTCTAGCATCTCTGCCACCTCCGAAGGCATGTCCCATAAACCTAGAGCTGATGAAGAGAAGAATCATGATGAGGTTACACCAATGAAGGAGAAGGGTGTCAAATCTGAACAAGGTCAAGCTTCAAATTCCAATACCCATATGGTGTTGGATTTTGTTAAGCTCTCCAAAGATGAATCAATTCGAGGGTCGAAAGTGGAATTGGATTTTTTCAATCCAATGAATAATGTGGGGGGTTCATCTTCTTCTAGGGCTAACAACACCGAAGGGAGAGATGAGAACAACAATGAAGAGAGATCATCAGAGGCTAAGACTTTTTCTTGCAACTTTTGCAAAAAAGAGTTTTCTTCTTCACAAGCCTTGGGAGGGCACCAAAATGCCCACAAGCAAGAGCGTGCTCTTGCAAAGCGTCGCGAAGGGATTGATGTTGGTGCTTTTGGGAACCCTCATTTTCTTTATTACCCTTATCATCCCACACACCCCTTTTATGGATCATATAATAGGGCACTTGGGGTTAGAATGGAGTCCATGATTCATAAGCCATCGTATCCTTCATCCTCGCTTGGTTTTAGGTTTGGTCAAAGGTGGTCAAGATCACAAGAGATGCTAAACCCTTCTCTTGATAGATTGAGGATGGAGGGTTTGCATGCAAATAGTGGAATTAGGATCCTAGGGAGTGATACAACTTTGAGGACACAAGATGAACATGGTACTATTGGACACAATATTCCATTCCTTGGAGAATCTTCTACAAATGTTGCTACCAAATCAAACTCAGCCCCATTGAGTACCGTGGGTGGTGATGATCATCCCAAGCAAGAAGGACCCTCTAGTCCTGATTCTTCTGATGAGATTGATTTGTCACTTAAGCTTTAA 915 0.4284 MASSHVLEGCPSKASSISATSEGMSHKPRADEEKNHDEVTPMKEKGVKSEQGQASNSNTHMVLDFVKLSKDESIRGSKVELDFFNPMNNVGGSSSSRANNTEGRDENNNEERSSEAKTFSCNFCKKEFSSSQALGGHQNAHKQERALAKRREGIDVGAFGNPHFLYYPYHPTHPFYGSYNRALGVRMESMIHKPSYPSSSLGFRFGQRWSRSQEMLNPSLDRLRMEGLHANSGIRILGSDTTLRTQDEHGTIGHNIPFLGESSTNVATKSNSAPLSTVGGDDHPKQEGPSSPDSSDEIDLSLKL 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00198 304 SUPERFAMILY beta-beta-alpha zinc fingers 116 146 IPR036236 -
Pumo11g00198 304 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 8 304 IPR044246 GO:0009788
Pumo11g00198 304 MobiDBLite consensus disorder prediction 87 102 - -
Pumo11g00198 304 MobiDBLite consensus disorder prediction 9 23 - -
Pumo11g00198 304 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
Pumo11g00198 304 MobiDBLite consensus disorder prediction 255 304 - -
Pumo11g00198 304 Pfam C2H2-type zinc finger 119 143 - -
Pumo11g00198 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Pumo11g00198 304 MobiDBLite consensus disorder prediction 1 58 - -
Pumo11g00198 304 MobiDBLite consensus disorder prediction 25 45 - -
Pumo11g00198 304 MobiDBLite consensus disorder prediction 286 304 - -
Pumo11g00198 304 MobiDBLite consensus disorder prediction 83 116 - -
Pumo11g00198 304 Gene3D Classic Zinc Finger 95 155 - -
Pumo11g00198 304 MobiDBLite consensus disorder prediction 257 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00198 Pumo-Chr11 5034186 5035100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00198 109 231 C2H2 Transcription Factor Family AT5G10970 46.825 1.72e-24 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo11g00198 zf-C2H2_6 1.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00198 - - gmx:102663393 523.857