Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo11g00190 | ATGGCAACAAAAACTCTCATTACCATCCCAAGATTTCTTCTTGGCTTCATGACCATCTTCATCATGGCAAGTGCACAATCCCCAAACTACATGGGTGATGACTGCCACAACTCAACAACACAACAAGCCCTAACCCTAACATACCAAACCAACCTTCACAACACCCTCTTGTGGCTCTCTTCTGATGCTGCCACAAGCAAGGGATACAACCACACCACCACAGGAAATGACACAGTTGATGCTGTGTATGGCCTCTATGATTGCAGGGGTGATGTCACAGGATCCTTCTGCCAGTTTTGTGTCTCCACTGCAGCCTCAGAGATTCTTCAACGCTGTCCTAACAAATCCTCTGCTGTGATATGGTACAACTACTGCATTCTCAGATACTCAAACCATAACTTCTTTGGGAACCTTACCATAACCCCATCATGGCAAATTGTGGGGTCCAAGAACACCATCAATCCAGAAGAGCTTCAGAAGGCTGAGGATTACATGCAAAGTTTGAGAAGAGAAGCCACTGTGGAGACCAACAAGTTGTATGCAATGGGAGAGTTCAATTTGAGTCAAGGTGAGCAAAGGTATGGGTTGGTGCAGTGCAGTAGGGACCTTACTAATGATGAGTGCAGCCAGTGTTTGGAGGCTATGTTAGACAAAGTTCCTCAGTGTTGTGGGGCAAAGCTAGGATGGCAGGTTTTGGCTCCAAGTTGTCTTATAAAGTATGATGATTACATGTTCTACCAGATTTCTAATCAAACATCTTCTCCTTTGCCTAATCCAGCTAAGAAGGGAAGTAAAATTAAGTCAACAACCCTGATCATAATCATAGTGAGTGTATTGGTGGCACTAGCTTTACTAGGTTGTTCTATCTACTACTTGTGGAGGCAGTATCTGTCAAATAAAGATGAATTGCTATCAGTGAACACCCCTACATCTTTTCATGGCCATGTTCAAAGAGAAGATGCACTGAATGCAGACCTTCCTACAATCCCTTTAATTTGGATTCGACAGAGCACTAATAACTTTTCAGAGTTCTGTAAATTAGGAGAAGGTGGATTTGGTCCTGTTTACAAGGGTAATTTAGAAGATGGAACAGAAATTGCTGTCAAAAGACTCTCTAAAGCATCTGGTCAAGGTCTGGAGGAGTTCAAGAATGAAGTGATCTTCATAGCCAAACTGCAACATAGGAACCTTGTGAGACTCTTGGGTTGCTGCATTGAGGAAAATGAAAAGCTGCTTGTGTATGAGTACATGCCAAATTCTGGCCTTGACTCTCACCTGTTCAATGAGGAAAAAAGAAAGCAACTAGATTGGAAGTTACGACTGAGCATTATTAATGGAATTGCAAAAGGACTTTTATACCTTCATGAAGACTCCAGACTTAGAGTAATCCATAGAGATCTGAAAGCCAGCAATGTTCTTCTGGATCAAGACATGAATCCAAAAATATCAGATTTTGGATTGGCAAGGACATTTGAAAAAGGCCAGAGTCAGGAAAATACAAAGAGAGTTATGGGAACCTATGGTTACATGGCTCCAGAATATGCAATGGAAGGGTTATATTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTTTATTAGAAATCATATGTGGGAAAAGGAACAGTGGATTCTATCTTTCAGAACATGGTCAAAGTCTTCTTGTATATAGTTGGAGACTTTGGTGTGAAGGAAAAAGCTTGGAACTGTTAGATCCAACACTAGAAAAGACACACAAAGCCAGTGAAGTTATGAGGTGCATACACATTGGTTTGTTGTGTGTTCAGGAAGATGCAGTAGATCGACCAACCATGTCCACGGTTGTTGTCATGCTGGCAAGTGACACAATCGCCCTTCCCAATCCTAATCATCCTGCATTTTCAGTTGGAAGGAAGATCAAAGAAGAAGAATCAACATCAAAAGCTTCCAAGGATCCTTCTGTTAATGAAGTAACAGTGACAAATATTTTACCCAGGTAG | 1980 | 0.4152 | MATKTLITIPRFLLGFMTIFIMASAQSPNYMGDDCHNSTTQQALTLTYQTNLHNTLLWLSSDAATSKGYNHTTTGNDTVDAVYGLYDCRGDVTGSFCQFCVSTAASEILQRCPNKSSAVIWYNYCILRYSNHNFFGNLTITPSWQIVGSKNTINPEELQKAEDYMQSLRREATVETNKLYAMGEFNLSQGEQRYGLVQCSRDLTNDECSQCLEAMLDKVPQCCGAKLGWQVLAPSCLIKYDDYMFYQISNQTSSPLPNPAKKGSKIKSTTLIIIIVSVLVALALLGCSIYYLWRQYLSNKDELLSVNTPTSFHGHVQREDALNADLPTIPLIWIRQSTNNFSEFCKLGEGGFGPVYKGNLEDGTEIAVKRLSKASGQGLEEFKNEVIFIAKLQHRNLVRLLGCCIEENEKLLVYEYMPNSGLDSHLFNEEKRKQLDWKLRLSIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDQDMNPKISDFGLARTFEKGQSQENTKRVMGTYGYMAPEYAMEGLYSVKSDVFSFGVLLLEIICGKRNSGFYLSEHGQSLLVYSWRLWCEGKSLELLDPTLEKTHKASEVMRCIHIGLLCVQEDAVDRPTMSTVVVMLASDTIALPNPNHPAFSVGRKIKEEESTSKASKDPSVNEVTVTNILPR | 659 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo11g00190 | 659 | FunFam | Cysteine-rich receptor-like protein kinase 28 | 31 | 133 | - | - | |
| Pumo11g00190 | 659 | Gene3D | - | 144 | 245 | IPR038408 | - | |
| Pumo11g00190 | 659 | Gene3D | - | 29 | 134 | IPR038408 | - | |
| Pumo11g00190 | 659 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 307 | 416 | - | - | |
| Pumo11g00190 | 659 | FunFam | Liguleless narrow1 | 417 | 620 | - | - | |
| Pumo11g00190 | 659 | Pfam | Domain of unknown function (DUF3403) | 614 | 659 | IPR021820 | GO:0004674 | |
| Pumo11g00190 | 659 | Pfam | Salt stress response/antifungal | 160 | 243 | IPR002902 | - | |
| Pumo11g00190 | 659 | Pfam | Salt stress response/antifungal | 35 | 131 | IPR002902 | - | |
| Pumo11g00190 | 659 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 462 | 474 | IPR008271 | GO:0004672|GO:0006468 | |
| Pumo11g00190 | 659 | FunFam | Cysteine-rich receptor-like protein kinase 10 | 143 | 245 | - | - | |
| Pumo11g00190 | 659 | Gene3D | Phosphorylase Kinase; domain 1 | 307 | 416 | - | - | |
| Pumo11g00190 | 659 | SMART | serkin_6 | 341 | 617 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pumo11g00190 | 659 | MobiDBLite | consensus disorder prediction | 632 | 654 | - | - | |
| Pumo11g00190 | 659 | ProSiteProfiles | Gnk2-homologous domain profile. | 140 | 245 | IPR002902 | - | |
| Pumo11g00190 | 659 | ProSiteProfiles | Gnk2-homologous domain profile. | 29 | 134 | IPR002902 | - | |
| Pumo11g00190 | 659 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 40 | 655 | - | - | |
| Pumo11g00190 | 659 | Gene3D | Transferase(Phosphotransferase) domain 1 | 417 | 619 | - | - | |
| Pumo11g00190 | 659 | SUPERFAMILY | Protein kinase-like (PK-like) | 327 | 627 | IPR011009 | - | |
| Pumo11g00190 | 659 | CDD | STKc_IRAK | 347 | 612 | - | - | |
| Pumo11g00190 | 659 | Pfam | Protein tyrosine and serine/threonine kinase | 346 | 610 | IPR001245 | GO:0004672|GO:0006468 | |
| Pumo11g00190 | 659 | ProSiteProfiles | Protein kinase domain profile. | 341 | 627 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pumo11g00190 | 659 | Coils | Coil | 158 | 178 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo11g00190 | Pumo-Chr11 | 4755793 | 4763019 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo11g00190 | 16 | 659 | Receptor kinase-like Gene Family | AT4G05200 | 43.259 | 0.0 | 535 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_DLSV | Pumo11g00190 | PK_Tyr_Ser-Thr | 1.7e-49 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo11g00190 | - | - | mtr:25490357 | 945.266 |