Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00179 ATGATGACTACAGAAGTTCAGAGGGTAGTGGTGATCCAGGATTCATCAAGAGATGTTAGTTCAAAGACAATCCTAGGGGCCCTGGAAAAGTTTTCAGTTAAAGCTGGAGATCAGCTTATAATTGTTGATATCCTTGATTGGATTAGCAGTCCCATGGGTTACATGGTCAGAGTTGATTCCAGTTCAATGATTTCAACAAACAAGAAAATAATTGAAAAAAGGCTTACCAAAAAAAAGGATGAATATCTTATGAACCAGAACATCAAGGAGATCTCCAACTACTGTCAAATGAATGAGATTGGATTCCAATTAGAAGTGCTTGTAGGCCCTACTGCAGAGGTTGCTTCTAATGCTGCCAAGGAATTTCAGGCGACAAGTTTGATACTAGTTAGACAAATTCACAAAGATATGAAGCATTTCATGCGCAAGCTCCCTTGTGGTATGTATAGGATAACAAGTGACAATTCAATTGAGAGGTTGAAAGATCCAAAATCAATGGTCAGTACTAAAACATTTGCCGACAGGCAAGAAAATGTAAGCTATAAAGAAATGTTTCCAGGAAGTGAAGAGGAGGAACGTTCTCTTCAGATGTCCAGGTCTTCATCAAGTGATCTGTTGACATCAACTGGAGTTTCAAGTCAGTGGAGTACAGAAGTCTCCATTTCTAGTTTCGGAAGCTTGCGGTATGGCCGTCAATACCAAGAGGGGAAGTTTTATTCAAATATAGAACAAGAAACAACAGGGAACCAATCTCTATTTCACATTTCAGAGAATGAAGAAACGAGCCAAATAGTATTAAATCAAAAAGAGCAGCACAGTAGAAATAATGAAACATCTCATATGGAGGAAGAATTTACAAATCCACTTTGTTCTGTGTGCAATAATAGACGACCAAAAGTTGGATTGAAGATAGATTTCAGTTATGCAGAGCTCTATACTGCTACACAAGGATTTTCTCCTAAGAACTTTCTGTCAGAAGGTGGATTTGGATCTGTCTACAAAGGACTGCTGAATGGAATGAAGATAGCTGTCAAGCAACATAAAAAGACAAGCTTCCAAGGAGAGAAGGAATTTAAGTCTGAAGTGAATGTACTTAGCAAAGCAAGACATGAGAATGTGGTTGTGCTGCTAGGTTCATGCTCAGAAGGAAATAATAGGCTTCTTGTGTATGAATATGTCTGCAATGGCTCACTTGACCAACATCTATCAGAACACTCTCGATTACCTCTTAGCTGGGAAGATAGAATCAACGTAGCTATTGGAGCTGCCAAAGGCTTACTATACTTACACAAGAACAACATAATACATAGAGATGTGAGACCAAACAATATCCTTATAACACATGATCATCAACCATTGCTGGGAGACTTTGGGTTAGCAAGGAATCAAAATCAAGACTCTATACACTCAACGGAAGTAATTGGAACTTTGGGGTACTTGGCACCAGAATATGCAGAACAAGGCAAAGTGTCTACCAAAACAGATGTGTATTCTTTTGGGGTGGTTCTACTACAGCTAATAACAGGAATGAGAACTACAGATAAAAGACTTGAAGGAAGAAGTCTTGTGGGATGGGCAAGGCCACTTTTAAGAGAGAGGAACTATCCAGATTTAATTGATGAAAGGATCATTAACTCTCATGATGTCCATCAACTATTTTGGATGGTTCGAATAGCAGAGAAATGTCTAAGCAGAGAGCCTCAAAGGAGACTAGATATGGTTCGGGTTGTTGATGCTCTGACTGACATAGTGGAAGGCAGAACATGTGACATCATATTAAGGGATTACTCCCCTGCAAGGTCAGATTCAATCTATAGTGCATCAGACTCTGATGAATCTGAAGATAAAATGCAGGAATCCTTCAGGTTTGAAGACGAGTTACTAAGTCACAGTTCAGAACCCATAGAAAGTAACAGCATAAGTCATATGATGCAGATGATTGTAAGACAGCCACCATCCCCTCCAATTCAGAGCATCTCTTCATGTAGCTCAAGCTCATATAAGTCTCATTATGAAGACTTCACATATGCTGAGCTGCATGCAGCCACACATGGCTTTTCCCCAAAGAACTTTCTGTCAGAAGGAGGGTTTGGTTGTGTCTACAAAGGGGAGTTTTGTGGACATAAGATTGCTGTTAAGCAACACATGTGTGCAAACCACAAAGGAGAGAAGGAATTCAAGTCTGAAGTTGATGCACTCAGCAAAGCAAGACATGACAATGTGGTCATGCTGTTAGGATCATGCTCAGAAGGGAACCTTAGACTTCTTGTTTATGAATATGTCTGCAATGGTTCATTGGACCAACACTTATCACAACATTCTCGTAAGCTTCTTAGTTGGCAAGACAGGGTGAAAGTAGCTACTGGAGCTGCCAGAGGATTGCTATACCTGCATGAGAACAACATCATACACAGAGACATGACACCAAACAACATTCTTCTTACACATGATTATGATGTATTGCTAGGGGATTTTGGTTTGGCTAGAACTGTACTTGAAGACTCCTCATACTCCACAGACTGTGTTGGGAATCTCGCTTATATGGCACCAGAATATGTAGAATTTGGTAAAGTGTCAATCAAGACAGATGTGTATTCTTTTGGGGTGGTTCTACTACAGCTAATAACTGGAATGAGGACCACAGACAAACGAGTTGGAGATAAAGCTGGAAATTGTCTTCTGAGGGATCCTCAAAAGCGATTGGATATGAATACAGTGGTCAACGCCTTAAACCAGATAGGCCAAGGTTGTAGCTGCATTATTCGAGAAGACCATACCCTTCCCATGTCAAGCCATTCTAAGTCAAAAGATGATAAACAGGGCTTTTCAGAATCAAAAGGTGGAAGTGAAAGTATAGGTTGA 2862 0.4001 MMTTEVQRVVVIQDSSRDVSSKTILGALEKFSVKAGDQLIIVDILDWISSPMGYMVRVDSSSMISTNKKIIEKRLTKKKDEYLMNQNIKEISNYCQMNEIGFQLEVLVGPTAEVASNAAKEFQATSLILVRQIHKDMKHFMRKLPCGMYRITSDNSIERLKDPKSMVSTKTFADRQENVSYKEMFPGSEEEERSLQMSRSSSSDLLTSTGVSSQWSTEVSISSFGSLRYGRQYQEGKFYSNIEQETTGNQSLFHISENEETSQIVLNQKEQHSRNNETSHMEEEFTNPLCSVCNNRRPKVGLKIDFSYAELYTATQGFSPKNFLSEGGFGSVYKGLLNGMKIAVKQHKKTSFQGEKEFKSEVNVLSKARHENVVVLLGSCSEGNNRLLVYEYVCNGSLDQHLSEHSRLPLSWEDRINVAIGAAKGLLYLHKNNIIHRDVRPNNILITHDHQPLLGDFGLARNQNQDSIHSTEVIGTLGYLAPEYAEQGKVSTKTDVYSFGVVLLQLITGMRTTDKRLEGRSLVGWARPLLRERNYPDLIDERIINSHDVHQLFWMVRIAEKCLSREPQRRLDMVRVVDALTDIVEGRTCDIILRDYSPARSDSIYSASDSDESEDKMQESFRFEDELLSHSSEPIESNSISHMMQMIVRQPPSPPIQSISSCSSSSYKSHYEDFTYAELHAATHGFSPKNFLSEGGFGCVYKGEFCGHKIAVKQHMCANHKGEKEFKSEVDALSKARHDNVVMLLGSCSEGNLRLLVYEYVCNGSLDQHLSQHSRKLLSWQDRVKVATGAARGLLYLHENNIIHRDMTPNNILLTHDYDVLLGDFGLARTVLEDSSYSTDCVGNLAYMAPEYVEFGKVSIKTDVYSFGVVLLQLITGMRTTDKRVGDKAGNCLLRDPQKRLDMNTVVNALNQIGQGCSCIIREDHTLPMSSHSKSKDDKQGFSESKGGSESIG 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00179 953 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 393 595 - -
Pumo11g00179 953 PANTHER OS01G0253100 PROTEIN 203 583 - -
Pumo11g00179 953 SUPERFAMILY Protein kinase-like (PK-like) 652 909 IPR011009 -
Pumo11g00179 953 MobiDBLite consensus disorder prediction 929 944 - -
Pumo11g00179 953 FunFam Proline-rich receptor-like protein kinase PERK8 280 392 - -
Pumo11g00179 953 MobiDBLite consensus disorder prediction 182 208 - -
Pumo11g00179 953 ProSiteProfiles Protein kinase domain profile. 686 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00179 953 FunFam Proline-rich receptor-like protein kinase PERK8 656 760 - -
Pumo11g00179 953 SUPERFAMILY Protein kinase-like (PK-like) 305 602 IPR011009 -
Pumo11g00179 953 ProSitePatterns Tyrosine protein kinases specific active-site signature. 434 446 IPR008266 GO:0004672|GO:0006468
Pumo11g00179 953 MobiDBLite consensus disorder prediction 929 953 - -
Pumo11g00179 953 SMART tyrkin_6 318 580 IPR020635 GO:0004713|GO:0006468
Pumo11g00179 953 SMART tyrkin_6 686 910 IPR020635 GO:0004713|GO:0006468
Pumo11g00179 953 Pfam Protein tyrosine and serine/threonine kinase 691 884 IPR001245 GO:0004672|GO:0006468
Pumo11g00179 953 Pfam Protein tyrosine and serine/threonine kinase 323 578 IPR001245 GO:0004672|GO:0006468
Pumo11g00179 953 Gene3D Phosphorylase Kinase; domain 1 654 760 - -
Pumo11g00179 953 Gene3D Phosphorylase Kinase; domain 1 276 392 - -
Pumo11g00179 953 Gene3D Transferase(Phosphotransferase) domain 1 761 925 - -
Pumo11g00179 953 Gene3D Transferase(Phosphotransferase) domain 1 393 593 - -
Pumo11g00179 953 ProSitePatterns Tyrosine protein kinases specific active-site signature. 802 814 IPR008266 GO:0004672|GO:0006468
Pumo11g00179 953 ProSiteProfiles Protein kinase domain profile. 318 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00179 Pumo-Chr11 4412069 4429929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00179 674 889 Trihelix Transcription Factor Family AT5G38560 48.444 4.83e-60 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Pumo11g00179 PK_Tyr_Ser-Thr 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00179 - - gmx:100794450 1146.72