Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00177 ATGAGTCAAATGACAAATGAGGTCAACAACAATGTGCACTGCGATGATCAGACCGGGTCACAGTCAAATGATGAGGGTAATGGAGTAGGTGTTGTTCTGAAGAAAGGGCCATGGACAGCTGCTGAAGATGATCTGCTGGTGAACTATGTCCAGAAGCATGGAGAGGGGAACTGGAATGCTGTTCAGAAGTATTCAGGCCTGTCTCGTTGCGGAAAAAGTTGTAGACTGCGATGGGCCAATCACCTAAGGCCAAATTTAAAGAAAGGAGCAATTACCAAAGAAGAGGAGCGGATGATTGCTGAACTCCATGCCAAAATGGGAAACAAATGGGCACGCATGGCGGCGCACTTGCCTGGTCGTACAGATAACGAAATAAAAAACTACTGGAACACCCGGATGAAGAGGCGTCAACGGGCCGGCTTGCCACTTTATCCTCCTGAAGTATTTATGCGAGCATTTCAAGAGAGAAAGCGTGGCCAAGGTACTGGTGAAATTAGTGATGGTGATGGAGGGCATCATGATTTCTTGAAGAAAAACAATTATGAGATACATGATGCAATATTTGACAGTCTGAAGGAAAATCAGGGAATCTTACCTTTTTTGCCTGACCTTCCTGATATTTCTGCTAATAGCATTCTGCCAAATGGTCTTGGTTCTCCCCCATATTGTAATTTTTTGCCATCAACATTACCTAACCATGATCATCTTCAAGAGTCAACAATGTCTTTTATTGGTTCCAGTGAATTGAACAGCAATGGGTTTTATCCATTTGACCATATTAAGGATAGTACTTCTGATAAGATTGCAGAATCATTTGGATTGTATTCTCCCCTTGATCGTGGTGCCTCCTCACTTGGCTCAATTTGTTACAGCCATTCACTATCGAATGGCAATTCCTCTACTTCTAAGCTGACTTCTGAGGCTGTGAAGTCAGAGCTCCCTTCACTCCAAATTCCAGAAACCGAATTTGGTAGTTGGGGTACATCTCCCCCACCTCCATTAAATGAGTCCTTTGATGTTTTCATTCATTCTCCTCAACCACCTAATGCACTAGACTCAGGTTCTTCTTCACCACTTAATAGTGGCTTGCTCGATGCATTACTTTATCAGGCGGAGACTCTTGGTTGTTCAAAGAATAATTCTTCTGACAAGAGTTCAAATTCTTCAATTGCAACTCCTGGTGACAGAGCTGAGAGTTCTGCTTTGAACATATATGAGACAGAATGGGAGGATTATACTGACCCTCTATCTCCCTTTGGAGCAACTTCAATCTTGAATGAGCATCCTGTTGTTAGCACCAATGGAAACTCATGGGATGAATGGGAACCTTTTCAGACCCTTAGTGAAAATTCTGCAGGCAACATTGAGAATTTGCAGTCGGTTGACCAGGTTTGGGCCCCTAAGAGCGAAAATCAATCCATGTCTCTGTTGAATCTCACTCTGCCAGATGTCTTGCTCACTTCGGATTGGCACGAGCTGTATTCTGAGCATGACAGCACGAACCAAGCCGTCATGACTGTTGCTAGTGATGATATCAGTGGACAGTAA 1548 0.436 MSQMTNEVNNNVHCDDQTGSQSNDEGNGVGVVLKKGPWTAAEDDLLVNYVQKHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPNLKKGAITKEEERMIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRMKRRQRAGLPLYPPEVFMRAFQERKRGQGTGEISDGDGGHHDFLKKNNYEIHDAIFDSLKENQGILPFLPDLPDISANSILPNGLGSPPYCNFLPSTLPNHDHLQESTMSFIGSSELNSNGFYPFDHIKDSTSDKIAESFGLYSPLDRGASSLGSICYSHSLSNGNSSTSKLTSEAVKSELPSLQIPETEFGSWGTSPPPPLNESFDVFIHSPQPPNALDSGSSSPLNSGLLDALLYQAETLGCSKNNSSDKSSNSSIATPGDRAESSALNIYETEWEDYTDPLSPFGATSILNEHPVVSTNGNSWDEWEPFQTLSENSAGNIENLQSVDQVWAPKSENQSMSLLNLTLPDVLLTSDWHELYSEHDSTNQAVMTVASDDISGQ 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00177 515 FunFam MYB-related transcription factor 34 87 - -
Pumo11g00177 515 FunFam Transcription factor GAMYB 90 136 - -
Pumo11g00177 515 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Pumo11g00177 515 MobiDBLite consensus disorder prediction 1 27 - -
Pumo11g00177 515 MobiDBLite consensus disorder prediction 378 396 - -
Pumo11g00177 515 CDD SANT 92 131 IPR001005 -
Pumo11g00177 515 SUPERFAMILY Homeodomain-like 34 129 IPR009057 -
Pumo11g00177 515 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Pumo11g00177 515 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 5 502 - -
Pumo11g00177 515 Gene3D - 34 87 - -
Pumo11g00177 515 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Pumo11g00177 515 MobiDBLite consensus disorder prediction 321 357 - -
Pumo11g00177 515 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Pumo11g00177 515 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Pumo11g00177 515 SMART sant 87 135 IPR001005 -
Pumo11g00177 515 SMART sant 34 84 IPR001005 -
Pumo11g00177 515 MobiDBLite consensus disorder prediction 378 397 - -
Pumo11g00177 515 CDD SANT 37 82 IPR001005 -
Pumo11g00177 515 ProSiteProfiles Myb-like domain profile. 33 82 IPR001005 -
Pumo11g00177 515 Gene3D - 90 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00177 Pumo-Chr11 4383688 4388391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00177 30 512 MYB Transcription Factor Family AT5G06100 41.000 3.60e-107 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo11g00177 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00177 K09422 - gmx:100792349 933.71