Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00175 ATGTCGAAAAACAAAAAGAGAAAGAGCGATAGCGAAGAAGACGACGACGTTTTCTACTACCGCTATAGCAGCGCAAACCCAACCCAAACCCAACCCAATCCCAATCCCAATCCCAAATCCAACAACAACACAAAGGGATCTTCGTCCTTGGCTCCGTCGAAATCAACGTTGTACGTTTCGAACATCGACTACTCGTTAACCAACTCGGACCTCCACACGCTCTTCTCCACGTTCGGGCGCATCGCGCGCGTGACTGTCCTCAAGGACCGCGCCACGCGCCTCAGCCGGGGCGTGGCCTTCGTCCAGTTCGTGTCCCGCCACGACGCGCGCGCCGCCGCCGCGCAGATGAACGGGAAAATCCTCAACGGCCGCACCCTCGCCGCCTCCATCGCCGCCGACAACGGCCGCGCCCCCGAGTTCATCCGCAAGCGCGTCTACCGCGACACCGACCGCTGCTTCGAGTGCGGCCAGCAGGGACACCTCTCCTACGACTGCCCACGCAACAAGCTCGGCCCCCGCCAGCGCCCCGAGCCCAAACGCCCCCGCCCCGTAACGACAACGACGAAGATGGCGGCGACTGACGATTACGATGATGACGGTGGTGGGGAGCGATTTGAGGATGATAATTGGGCTTCTGTCGTGGATGACGGTGCTGATGAGAGGTTGTTGGCGGGAAACCGTGGTGATGATGGTGATGTTGTGGGTGCAAAGAGTAAGAAGAAGAAGAAGAAAGGTGGGTACTTCAGTGATGAGAGTGATGACGATGATTGA 771 0.5875 MSKNKKRKSDSEEDDDVFYYRYSSANPTQTQPNPNPNPKSNNNTKGSSSLAPSKSTLYVSNIDYSLTNSDLHTLFSTFGRIARVTVLKDRATRLSRGVAFVQFVSRHDARAAAAQMNGKILNGRTLAASIAADNGRAPEFIRKRVYRDTDRCFECGQQGHLSYDCPRNKLGPRQRPEPKRPRPVTTTTKMAATDDYDDDGGGERFEDDNWASVVDDGADERLLAGNRGDDGDVVGAKSKKKKKKGGYFSDESDDDD 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00175 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 133 IPR000504 GO:0003723
Pumo11g00175 256 MobiDBLite consensus disorder prediction 1 52 - -
Pumo11g00175 256 MobiDBLite consensus disorder prediction 164 256 - -
Pumo11g00175 256 SMART rrm2_1 56 129 IPR003954 GO:0003676
Pumo11g00175 256 MobiDBLite consensus disorder prediction 1 19 - -
Pumo11g00175 256 SUPERFAMILY Retrovirus zinc finger-like domains 135 169 IPR036875 GO:0003676|GO:0008270
Pumo11g00175 256 Gene3D - 142 183 - -
Pumo11g00175 256 ProSiteProfiles Zinc finger CCHC-type profile. 151 167 IPR001878 GO:0003676|GO:0008270
Pumo11g00175 256 Pfam Zinc knuckle 151 166 IPR001878 GO:0003676|GO:0008270
Pumo11g00175 256 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 8 256 IPR044598 GO:0000398|GO:0005689
Pumo11g00175 256 SMART rrm1_1 56 129 IPR000504 GO:0003723
Pumo11g00175 256 Gene3D - 1 139 IPR012677 -
Pumo11g00175 256 SMART c2hcfinal6 151 167 IPR001878 GO:0003676|GO:0008270
Pumo11g00175 256 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 1 139 - -
Pumo11g00175 256 MobiDBLite consensus disorder prediction 205 237 - -
Pumo11g00175 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 126 IPR000504 GO:0003723
Pumo11g00175 256 MobiDBLite consensus disorder prediction 22 52 - -
Pumo11g00175 256 SUPERFAMILY RNA-binding domain, RBD 26 138 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00175 Pumo-Chr11 4352296 4353088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00175 57 131 Eukaryotic Initiation Factors Gene Family AT1G34140 38.667 6.14e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00175 K13154 - gmx:100814914 339.732