Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00174 ATGGAAGAAGGGTTAGGGCAAAACTCAGTTCCTCCTCATGGTTCCATTGATAAGTCCAGGATTCTGGATATTAAACCTCTGAGGAGTTTGATTCCAATTTACTCAATGTCTTCTCAAGCTCCACCTGCTGGCCAGTATCCTTCTGGGTTTTCTCCATTTTTCCCATTTGGTGCACCTCAGCAAACTCCAACTGGGGTGACAACACGGGGTGCTGCCACACCTGCTCCGTTAAGGGCATATAGGAGCCCACTTGGGGCAGGAGACACTAGTTCAACAATGGAGGGGTTCAATGATCAGGATACTTCTGGGAAGAAAAAACGTGGATCACCGTCACGCCGCGCCAAATCATCTGTAAATAAGCCTAAGAAAAGTCAAGAGCCACATGCTGATTTAAGTGGTTTAGTTGGTATTAGCCCTGCCCAAAGAGAAGATGGTAGCCGTGAAGTGGTTAATCTTGTGCTCATCGCGTTTGATGCGCTTCGAAGAAGGCTCTGCCAACTTGAGGAGGCCAAGGAATTGAGCTCGGGTTCGATCAAGCGTGCAGATTTGAAAGCTTGCAATACTTTGATGACCAGAGGAATTCGGACCAACATGAGGAAGAGAATAGGACCGGTTCCTGGGATTGAGATTGGTGACATTTTCTTTTTCCGAATGGAATTGTGTATTGTGGGTTTGCATGCTCCCTCCATGGGTGGAATTGATGCCTTGCATATCAGGGGTGAGTTTGAGGAGGAAACTCTGGCTGTGTGCATTGTTTCGTCAGGAGAATATGATGATGATGCCGAGGATAGTGATGTTATAATTTATACTGGTCAGGGAGGGAACTTCTTCAAGAAAGATAAGCATGCGATTGACCAGAAGCTTCAAAGGGGTAATCTTGCTTTGGATAGGAGCTCGCGACAGCACAATGAAATAAGAGTCATCCGGGGCATAAGAGATGGTGTGAATCCGAATAATAAAATCTATGTCTATGATGGTCTGTATAAAATCCAAGATTCATGGATAGAAAAAGCAAAAGGTGGTGGTGGTGTATTTAAGTATAAGTTGGTAAGAATGCCTGGACAGCCTAGTGCCTTTGCTGTTTGGAAATCAATTCAGAAGTGGAAATCTGGCTCCCCTTCAAGGACTGGACTTATTATTGCAGACCTTTCCAATGGAGCTGAGGGTATTCCTGTATCACTTGTCAATGAGGTTGATAATGTGAAAGCGCCTACTTTTTTCAATTATTTCCATTCTCTTAGACATCCAAAATCATTCAGTTTAATGCAGCCTTCACATGGGTGCACCTGTACTAAAGCATGTGTCCCGGGTGATTTGAACTGCTCTTGCATTAGGAGAAATGAAGGTGATTTCCCATATACTGGCAATGGCGTTCTGGTGAGCCGGAAGCAATTGGTTCATGAATGTGGCCCCACATGTCAGTGTTTTCCTAACTGCAAAAATCGAGTATCCCAAACTGGTTTAAAGCACCACATGGAAGTGTTCAAAACGAAGGATAGAGGGTGGGGTCTTCGATTGCTGGATCCTGTTCGTGCTGGTACTTTTATTTGTGAATATGCAGGAGAAGTTGTTGACAAAGCCAAGGCAAGTCAGCTTGTGAGGGAAGGAGATGAGTATGTTTTTGATACAACCCGTATTTATGGTCAATTCAAGTGGAATTATGAGCCTAAGCTTTTGGAAGAAGTCGGTCCCAATGACTCTAGTGAGGATTATGCCATGCCGTATCCTTTAATTATAACTGCCAAGAATGTTGGTAATGTAGCTAGATTCATGAATCATAGTTGCTCCCCAAATGTTTTTTGGCAGCCTGTCGTATATGAAGAAAACAACCAATCGTACCTCCATGTTGCATTTTTTGCACTCAGACACATTCCGCCAATGACAGAGTTAACCTATGATTATGGGTTTGCCCGATCTGATCATGCTGAGGGTAGCAGTGCAGCCAAAGGGAGAAAGAAATGCTTATGTGGATCATCAAAATGCAGTGGTTCTTTTGGTTAA 2001 0.4393 MEEGLGQNSVPPHGSIDKSRILDIKPLRSLIPIYSMSSQAPPAGQYPSGFSPFFPFGAPQQTPTGVTTRGAATPAPLRAYRSPLGAGDTSSTMEGFNDQDTSGKKKRGSPSRRAKSSVNKPKKSQEPHADLSGLVGISPAQREDGSREVVNLVLIAFDALRRRLCQLEEAKELSSGSIKRADLKACNTLMTRGIRTNMRKRIGPVPGIEIGDIFFFRMELCIVGLHAPSMGGIDALHIRGEFEEETLAVCIVSSGEYDDDAEDSDVIIYTGQGGNFFKKDKHAIDQKLQRGNLALDRSSRQHNEIRVIRGIRDGVNPNNKIYVYDGLYKIQDSWIEKAKGGGGVFKYKLVRMPGQPSAFAVWKSIQKWKSGSPSRTGLIIADLSNGAEGIPVSLVNEVDNVKAPTFFNYFHSLRHPKSFSLMQPSHGCTCTKACVPGDLNCSCIRRNEGDFPYTGNGVLVSRKQLVHECGPTCQCFPNCKNRVSQTGLKHHMEVFKTKDRGWGLRLLDPVRAGTFICEYAGEVVDKAKASQLVREGDEYVFDTTRIYGQFKWNYEPKLLEEVGPNDSSEDYAMPYPLIITAKNVGNVARFMNHSCSPNVFWQPVVYEENNQSYLHVAFFALRHIPPMTELTYDYGFARSDHAEGSSAAKGRKKCLCGSSKCSGSFG 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00174 666 Gene3D - 185 370 IPR036987 -
Pumo11g00174 666 Gene3D SET domain 372 665 IPR046341 -
Pumo11g00174 666 Pfam Pre-SET motif 384 482 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo11g00174 666 SUPERFAMILY SET domain 390 663 IPR046341 -
Pumo11g00174 666 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 100 660 - -
Pumo11g00174 666 ProSiteProfiles Pre-SET domain profile. 426 487 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo11g00174 666 SMART preset_2 380 474 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo11g00174 666 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 186 370 - -
Pumo11g00174 666 SMART G9a_1 198 355 IPR003105 -
Pumo11g00174 666 MobiDBLite consensus disorder prediction 1 21 - -
Pumo11g00174 666 ProSiteProfiles SET domain profile. 490 635 IPR001214 GO:0005515
Pumo11g00174 666 MobiDBLite consensus disorder prediction 55 69 - -
Pumo11g00174 666 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 64 666 IPR025794 GO:0016571
Pumo11g00174 666 ProSiteProfiles YDG domain profile. 203 351 IPR003105 -
Pumo11g00174 666 ProSiteProfiles Post-SET domain profile. 650 666 IPR003616 -
Pumo11g00174 666 MobiDBLite consensus disorder prediction 51 134 - -
Pumo11g00174 666 Pfam SAD/SRA domain 202 355 IPR003105 -
Pumo11g00174 666 SMART set_7 490 641 IPR001214 GO:0005515
Pumo11g00174 666 Pfam SET domain 501 635 IPR001214 GO:0005515
Pumo11g00174 666 SUPERFAMILY PUA domain-like 185 372 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00174 Pumo-Chr11 4324522 4326522 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00174 17 666 Su(var)3-9 homologs AT5G04940 52.709 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo11g00174 SAD_SRA 3.9e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00174 K24405 - gmx:100812173 1237.63