Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00169 ATGGAGGACAAAGTACTAACAGGTTCATTTTATGATTTTAACATCGCAGTTTGCTTCGTTGAAGAAATCCGGAGGGGGACAGATGCAATACAGTGTATATTACTCGACATATGCAAAATAAAAAAAGTTCAACTGCATGCTAAAACCTTCGAAAAGATGGACAATCTGAGGATGCTCCAGTTCTATAAGTCTTCTGGCTATTGGAATGAATCAAATGTGTTTCTTCCATCATTTCTTAAAAGTCTTCCGGATGGTTTAAAAATTCTTCGTTGGGATGGCTTCCCTCAAAGATCTTTGCCGCCGAACTTTTGCCTAGAAAATCTCGTTACACTTGAAATGCAACATTGCCATCTTGAACAACTTTGGGATGAAGATCAGTGTTTACCCAAGTTGAAAAGGCTGGACCTGAGTTATTCTCGGAAACTAAAAAGAATACCGGACCTCTCGCTATCACCAAGTATTGAAGAAATAATTCTCAGTGATTGTGTAAGCTTGATTGAGGTTTACTTCAGAGGTTTCCTCAGCAAGCTCAATTGTTTACGTTTAAATGGCTGTGTTGAGCTGAGCAGTTTAATTATTCGGAGCAATATTCTATCGAGATCATCAGGTTTAATTTTGCTTGCCAATTGTCGCATGCTTGAAACATTTTTAATCAGTCCATTGACAAATTATTTTTCTGTGGAGCTCCTAAGAGGAACGAATTTTAGGTTTAACTCTGAAGCAGTGGCGGCTAATATTGGTTACACTGAAGTGTTTAACTCTGAAGCAGTGTCGGCTAATATAGATTACACTGAAGTGTTTAACTCTGAAGCAGTGGCGGCTAATATTATAGATTACACTGAAGTGTTGACAGAAGGCGTGTCTTCAATATTTCCAAGTTCGAATGAGTTGGGTTGGTTAGATCTCTCTAATTGTGAATCCCTTACAATACTTCCAATTGACCTTTTTAATTTCAAATTCCTAGAAAGACTTCATCTCGGTGGTTGCTCAAATTTGGAAAAATTTCCCGAAATTAAGGGAGGAATGGAAAATCTAACGGTGCTCCGCTTAGACCGGACAGCAATACGGGAACTACCTTCGTCCTTGTGCTGTTTGGTGGGGCTTGAAGAATTGAGCTTGCAAAGGTGCACAAGTCTTGAGATTGTTCCATCTTCCATTGGAAGTCTCAGCAAACTCTGCAAGTTAGACCTTACCTACTGTGAATCACTTGAAACTTTTCCCAGCAGCATTTTCAAATTGAGGTTGATGAAACTTGTTTTGTATGGTTGCTCAATGCTAAGGACCTTCCCAGATATCTTGGAGCCTGCACCAAGTTTTGCTCACATTGACTTGACAAAAACGGCGGTTAAAGAACTACCTTCATCATTTGATAATCTGGTTGGTCTTCGAACCCTGCGTCTGAACATGTGCACTGATCTTGAGTCGCTTCCAAGCAGCATTGTTAATCTAAACCTTCTCTCCGAGCTTGATTGTTCAGGGTGTGCCAAATTAACGGAAATCCCAGGTGACATTGGTCGCTTGTCGTTATTAAGGGAACTGTCACTGCATGAGAGCGGAATTGTAAACCTTCCTGAGAGCATTGCTCATCTTTCAAGCTTGAAATCACTCGATTTAAGCGATTGCGTTAAGCTTGAATGCATCCCACAGCTTCCGCCGTTTCTAAAACAATTATTGGCATTTGATTGTCCATCCATTCAAAGAGTGATGCCATATTCAAGGATTCCAACCTCATCAGATTCCACAGAGGGTATCTTCAAATTTCATCTCACCAATAGTCAACAAATGGATCCAAGTGCTCGTGTTAATATTGGGAATGATGCATGGCTTAGAATGACCGAGGAAGCATATAGGTCTGTGTTCTTTTGTTTTCCAGGGAGTGCAGTTCCTCATTGGTTCCCTTTTCGTAGCCAGGGACATTCAGTAACTATGAGTACAGATTCTCTAAATTTGTGCAATGATAATAGGCTCATTGGTTTTGCTTTGTGTGTCGTTTTCAGACTCTTGGATATCGATGATACAAAAGGTAGACATGGTTTTTTCAGTTACAGAATAAGATTTGAATCTGATGATGGCATGTACATTCTTCCCGACCATGATGAGCTAAGAAACCATTTCTATTGGAAGGGTAGAGAGAGAATAGTTGATCAAGATCACACATTCCTATGGAAATATAACTTGGAATCCACAAGCATGAGCCTTATGCTCAGTCATGCTCAATGCTTCACTTTCGAGATTCGCTATTATGATTATGGCTTTCGGAGGCAGCCATATTTCAAATCAATTGTCACAATAAAAAAATGTGGAATATGCCCTCTTTATACCAAATAA 2328 0.3978 MEDKVLTGSFYDFNIAVCFVEEIRRGTDAIQCILLDICKIKKVQLHAKTFEKMDNLRMLQFYKSSGYWNESNVFLPSFLKSLPDGLKILRWDGFPQRSLPPNFCLENLVTLEMQHCHLEQLWDEDQCLPKLKRLDLSYSRKLKRIPDLSLSPSIEEIILSDCVSLIEVYFRGFLSKLNCLRLNGCVELSSLIIRSNILSRSSGLILLANCRMLETFLISPLTNYFSVELLRGTNFRFNSEAVAANIGYTEVFNSEAVSANIDYTEVFNSEAVAANIIDYTEVLTEGVSSIFPSSNELGWLDLSNCESLTILPIDLFNFKFLERLHLGGCSNLEKFPEIKGGMENLTVLRLDRTAIRELPSSLCCLVGLEELSLQRCTSLEIVPSSIGSLSKLCKLDLTYCESLETFPSSIFKLRLMKLVLYGCSMLRTFPDILEPAPSFAHIDLTKTAVKELPSSFDNLVGLRTLRLNMCTDLESLPSSIVNLNLLSELDCSGCAKLTEIPGDIGRLSLLRELSLHESGIVNLPESIAHLSSLKSLDLSDCVKLECIPQLPPFLKQLLAFDCPSIQRVMPYSRIPTSSDSTEGIFKFHLTNSQQMDPSARVNIGNDAWLRMTEEAYRSVFFCFPGSAVPHWFPFRSQGHSVTMSTDSLNLCNDNRLIGFALCVVFRLLDIDDTKGRHGFFSYRIRFESDDGMYILPDHDELRNHFYWKGRERIVDQDHTFLWKYNLESTSMSLMLSHAQCFTFEIRYYDYGFRRQPYFKSIVTIKKCGICPLYTK 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00169 775 SUPERFAMILY L domain-like 31 212 - -
Pumo11g00169 775 Gene3D Ribonuclease Inhibitor 415 567 IPR032675 -
Pumo11g00169 775 Pfam C-JID domain 623 774 IPR045344 -
Pumo11g00169 775 SMART LRR_typ_2 105 127 IPR003591 -
Pumo11g00169 775 SMART LRR_typ_2 342 365 IPR003591 -
Pumo11g00169 775 SMART LRR_typ_2 128 152 IPR003591 -
Pumo11g00169 775 SMART LRR_typ_2 389 413 IPR003591 -
Pumo11g00169 775 SMART LRR_typ_2 507 530 IPR003591 -
Pumo11g00169 775 Gene3D Ribonuclease Inhibitor 277 414 IPR032675 -
Pumo11g00169 775 PANTHER LEUCINE-RICH REPEAT-CONTAINING 345 501 - -
Pumo11g00169 775 SUPERFAMILY L domain-like 282 562 - -
Pumo11g00169 775 Gene3D Ribonuclease Inhibitor 28 223 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00169 Pumo-Chr11 4216467 4222364 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00169 395 557 WRKY Transcription Factor Family AT5G45050 32.317 2.96e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00169 - - ccaj:109803335 904.82