Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00163 ATGTCTTCCTTCAAATCCTACGGGAAAGTTGATGAGCATGAGCAAATGGTGTTGGAAGCAAAAAGAAAAACCCGCAAGAGAATCACAATCATAGGGCTGTCCTCAATAGTCCTAGCAGGTGTTATATTTGCTGCTGTATTTGGCATTGTTAGCACCACTCGTGACAACTCCTCACAAGGTGCCAATGATGCTCACACTGTGACCACTTCACTGAGGGCTGTTTGTGATGTGACTTTGTACAAGGACTCATGCTATAGCAGCCTTGGCTCTGCTGTGGACTCAAGGCAGGTTCAGCCTGAGGAGTTGTTCATGTTGTCAATGAAGGTGGCCTTGTCTGAAGTGTCTAAAGCTGTTGAGTATTTCAATGATCATGATCAGCATGGAGTTTTCAAAGGGTTGAAGTTGAAGGATAGAAGGACTAAGGAGGCTTTGAAAAATTGCAGGGAGCTTTTGGGTCTTGCAGTTGACCATCTGAATAGCTCTTTGACATCAGGGGAAAAGTCTTCACTTCTTGACGTTTTTGAGGATCTTCAAACATGGTTAAGTGCTGCAGGTACATACCAGCAGACTTGCATTGAAGGCTTTGAAGATGCAAAAGAAGCAATCAAGTCAAGTGTAGTAAGCTATCTTAAAAATTCCACACAGTTCACTAGTAACAGTCTTGCCATCATTACCTGGATCAACAAGGCTGCAACCACGCTGAACTTGCGGCGCTTACTGAGTTTACCTCATCAGAATGAAGCACCAGAATGGTTTCATTCAAAAGATAGGAAGCTGCTTCTAACAGAGGATTTGAGGAAAAAAGCTGACATTGTTGTGGCCAAAGATGGCAGTGGGAAATATAAAAAAATTTCTGATGCACTTAAACATGTCCCTAATGAGAGTAACAAGAGGACTGTGATCTATGTTAAGAGAGGGGTTTACTATGAAAATGTGAGGGTAGAGAAGACCAAATGGAATGTGATGATGATTGGTGATGGTATGACTTCTACTATTGTATCTGGCAGCCGTAACTTTGTGGATGGCACACCAACATTTTCAACAGCAACATTTGCTGTGTTTGGAAGAAATTTCATAGCTAGAGATATGGGTTTTCGCAACACAGCTGTTCCACAGAAGCATCAAGCAGTGGCACTAATGACAAGTGCTGATCAAGCAGTTTACTATAGGTGTCACATTGATGCATATCAAGACACTCTCTATGCTCATTCCAACCGCCAATTCTACAGAGAATGCAACATCTATGGCACTGTTGATTTCATTTTTGGCAATTCTGCAGTTGTGATCCAAAACTGCAACATTAGGCCAAAGCTACCTATGCATGGCCAGCAGAACACAATCACAGCTCAGGGAAAAATTGACCCTAACATGAACACTGGGATCTCCATTCAATACTGCAACATTTCACCCTTTGGGAACTTGAGTTCTGTCCAGACATACCTTGGAAGACCCTGGAAGAATTACTCAACCACAGTCTACATGAGATCCAGAATGGAAGGTTTTGTGAACCCCAAAGGCTGGTTACCATGGACCGGGAACTCGGCACCAGACACCATTTTCTATGCAGAATTTCAGAATGTTGGACCAGGTGCTTCAACAAAGAATAGGGTGAAGTGGAAGGGTTTGAGAACCATTACTAGTAAACAAGCCAGCAAGTTTACTATCAAGGCTTTTCTACATGGAGACAAATGGATTTCTGCATCAGGTGCCCCATTTAAGTCTGATCTATGA 1731 0.4269 MSSFKSYGKVDEHEQMVLEAKRKTRKRITIIGLSSIVLAGVIFAAVFGIVSTTRDNSSQGANDAHTVTTSLRAVCDVTLYKDSCYSSLGSAVDSRQVQPEELFMLSMKVALSEVSKAVEYFNDHDQHGVFKGLKLKDRRTKEALKNCRELLGLAVDHLNSSLTSGEKSSLLDVFEDLQTWLSAAGTYQQTCIEGFEDAKEAIKSSVVSYLKNSTQFTSNSLAIITWINKAATTLNLRRLLSLPHQNEAPEWFHSKDRKLLLTEDLRKKADIVVAKDGSGKYKKISDALKHVPNESNKRTVIYVKRGVYYENVRVEKTKWNVMMIGDGMTSTIVSGSRNFVDGTPTFSTATFAVFGRNFIARDMGFRNTAVPQKHQAVALMTSADQAVYYRCHIDAYQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVIQNCNIRPKLPMHGQQNTITAQGKIDPNMNTGISIQYCNISPFGNLSSVQTYLGRPWKNYSTTVYMRSRMEGFVNPKGWLPWTGNSAPDTIFYAEFQNVGPGASTKNRVKWKGLRTITSKQASKFTIKAFLHGDKWISASGAPFKSDL 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00163 576 CDD PMEI-like_3 73 229 - -
Pumo11g00163 576 SMART PMEI_2 66 223 IPR006501 GO:0004857
Pumo11g00163 576 FunFam Pectinesterase 67 228 - -
Pumo11g00163 576 SUPERFAMILY Pectin lyase-like 268 573 IPR011050 -
Pumo11g00163 576 ProSitePatterns Pectinesterase signature 2. 414 423 IPR033131 -
Pumo11g00163 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 227 IPR035513 -
Pumo11g00163 576 Pfam Plant invertase/pectin methylesterase inhibitor 71 223 IPR006501 GO:0004857
Pumo11g00163 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 69 228 IPR035513 -
Pumo11g00163 576 PANTHER PECTINESTERASE 41 566 - -
Pumo11g00163 576 FunFam Pectinesterase 264 576 - -
Pumo11g00163 576 Gene3D - 265 576 IPR012334 -
Pumo11g00163 576 Pfam Pectinesterase 270 562 IPR000070 GO:0030599|GO:0042545
Pumo11g00163 576 NCBIfam pectinesterase inhibitor domain 45 227 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00163 Pumo-Chr11 4059160 4062193 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00163 7 576 Carbohydrate Esterase AT3G10710 56.021 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00163 - - gmx:100811152 1089.33