Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00162 ATGTCACCCCCACCATTTTCCCTCTCTCTCTCCATTTCCCTTCTCTTTCTCTTCCTCTTAGCACCATTACTCTTAGCTCAATCTCCACCTTCTCCACCTTCTTCTGTTCCTCCCACTCCTTCTTCTTCTGCTGCTGCCTGCAAAGGCACACTATATCCAAAACTATGCCGTTCCATTCTCTCAGCCATTCGCTCCTCCCCTTCTGACCCTTACGGCTATGGCAAGTTCTCCATAAAACAAAGCCTCAAACAGGCACAAAAACTAGCCAAGGTGTTCGAGGACTTCCTGCGGCGCCACCAATCATCACCGTCATCATCTCCCCTTAACCATGCAGAGGTTGCATCACTTGGCGACTGCAGGGACCTCAACAAGCTCAACGTGGACTACTTGGCCTCCATCTCCGAGGAGCTCAAATCCGCGGGCTCCTCGGACTCGGAGCTAGTGGAGAAAATCGAGAGCTACCTCAGTGCTGTGGCCACCAACCACTATACTTGCTATGATGGGTTGGTTGTGACCAAGAGCAGCATTGCCAATGCCCTTGCCGTGCCACTCAAGGGTGTGACACAACTGTACAGTGTCTCACTTGGGTTGGTCACTGAGGCTCTTGACAAAAACCTCAGGAGGAACAAGACCCGCAAACATGGACTCCCCACCAAGGCCTTCAAGGTTAGGCAACCACTTGAGAAGCTCATCAAGCTTCTTCGCACAAAGTATAGTTGCGCCAAATTATCCAATTGTACTAGAACTAGACCTGAAAGGATTCTTAAAGAAAGTGGAAGCCAAGGAATTTTATTGTACGACTTTGTGATTGTGAGCCCATATGGAATAGACAACTACACTTCCATTGGAGATGCTATTGCTGCTGCACCCAATAACACAAAGCCTGAAAATGGATATTTCCTTGTGTATGTTAGGGAGGGATACTATGAGGAATATGTGGTTATTCCCAAAGAAAAGAAGAATATATTGCTAGTTGGAGATGGTATTAACAAGACTATCATCACAGGGAACCATAGTGTCATAGATGGTTGGACAACTTTCAATTCTTCCACCTTTGCTGTTTCTGGAGAAAGATTTATAGCAGTGGATGTTACATTCAGAAACACAGCTGGACCTGAAAAACACCAAGCAGTGGCAGTGAGGAACAATGCTGACCTCTCCACATTCTACCGTTGCAGTTTTGAAGGATATCAAGACACACTCTATGTCCACTCTTTGAGGCAATTCTATAGGGAATGTGAAATCTATGGCACTGTGGACTTCATTTTTGGCAACGCGGCCGTGGTCTTCCAGGGTTGCAAAATCTATGCCAGAAAACCATTGCCAAACCAGAAGAATGCTGTGACAGCACAAGGAAGAACTGATCCCAATCAGAACACTGGCATTTCAATCCAAAACTGCACCATTGATGCTGCACCAGACTTGGCCATGGACTTGAATTCCACGATGAGTTACTTAGGCCGGCCATGGAAGGTGTATTCGAGGACTGTCTACCTGCAATCATTATATTGGAAATTTGGGTTAGACACCCTCTTTTATGGTGAGTTCAACAACTATGGACCTGGTTCTAACACTAGCAATAGAGTGCAATGGCCTGGTTACTTTCTGTTGAATGCTACTCAAGCTTGGAACTTTACAGTCCTTAATTTTACATTGGGAAACACTTGGCTTCCTGACACAGATATACCTTACACTGAAGGACTACTAAGATAG 1713 0.4583 MSPPPFSLSLSISLLFLFLLAPLLLAQSPPSPPSSVPPTPSSSAAACKGTLYPKLCRSILSAIRSSPSDPYGYGKFSIKQSLKQAQKLAKVFEDFLRRHQSSPSSSPLNHAEVASLGDCRDLNKLNVDYLASISEELKSAGSSDSELVEKIESYLSAVATNHYTCYDGLVVTKSSIANALAVPLKGVTQLYSVSLGLVTEALDKNLRRNKTRKHGLPTKAFKVRQPLEKLIKLLRTKYSCAKLSNCTRTRPERILKESGSQGILLYDFVIVSPYGIDNYTSIGDAIAAAPNNTKPENGYFLVYVREGYYEEYVVIPKEKKNILLVGDGINKTIITGNHSVIDGWTTFNSSTFAVSGERFIAVDVTFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECEIYGTVDFIFGNAAVVFQGCKIYARKPLPNQKNAVTAQGRTDPNQNTGISIQNCTIDAAPDLAMDLNSTMSYLGRPWKVYSRTVYLQSLYWKFGLDTLFYGEFNNYGPGSNTSNRVQWPGYFLLNATQAWNFTVLNFTLGNTWLPDTDIPYTEGLLR 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00162 570 SMART PMEI_2 38 197 IPR006501 GO:0004857
Pumo11g00162 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 200 IPR035513 -
Pumo11g00162 570 CDD PMEI-like_3 45 200 - -
Pumo11g00162 570 FunFam Pectinesterase 265 568 - -
Pumo11g00162 570 PANTHER PECTINESTERASE 19 558 - -
Pumo11g00162 570 Gene3D - 267 570 IPR012334 -
Pumo11g00162 570 Pfam Pectinesterase 269 553 IPR000070 GO:0030599|GO:0042545
Pumo11g00162 570 SUPERFAMILY Pectin lyase-like 268 567 IPR011050 -
Pumo11g00162 570 NCBIfam pectinesterase inhibitor domain 11 199 IPR006501 GO:0004857
Pumo11g00162 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 199 IPR035513 -
Pumo11g00162 570 Pfam Plant invertase/pectin methylesterase inhibitor 44 196 IPR006501 GO:0004857
Pumo11g00162 570 ProSitePatterns Pectinesterase signature 2. 415 424 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00162 Pumo-Chr11 4053672 4058562 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00162 7 569 Carbohydrate Esterase AT3G10720 56.006 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00162 K01051 - gmx:100816503 974.541