Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00159 ATGGAGGCCTCAAAGCGTTTGCCTATGGCTAGGAAAGGAGTTGGATCCAAGGGAGAGACCAGACAGCTATTAGCTAACCATTTTAGAATTCGCCTAGCCAGGCCCAACAATGATTTTGATGGCTACTTCTACCATTATAGTGTTGCCATGAGTTACGAAGATGAACACCCAGCTGAAGCCAAGGGTATGGGGAGAAAAGTTCTAGATCAAGTTTGTAAAACATATGATGAACTGAGGAACAAAAATTTTGCATATGATGGTGAGAAAAGTTTATTCACTCTTGGTTGTCTACCAAGTCAGAATCTTCAATACACTGTTGTGATAGAAGTTGTTTCAGCAAGGAGGGTTGGAAGGGAAGGAAACCCTGATGATCATCAGAGTCATGATGAAGGAGATGCAAAAAGAATGAAGCGTCAATCTTGGACCAAAACCATCTTTGTGGATATCAAATATGCAGCCAAAATCCCATTGCAAGCAGTTGCAGATGCATTGCGTGGTCAGGATTCTGAGAACTCTCAGGAAGCACTGAGGATTCTGGACATCATACTGAGACAACATGCTGCAAGCAAGGGATGCCTCCTTGTTCGCCAATCCTTCTTTCATAACAATGATCCAAACATTGATGACGACATAGGAGGTGGTGTGCTAGTGTGCCGTGGTTTTCATTCAAGCTTTCGAGCCACACAAAGAGGTTTATCTCTCAACATTGATGTGTCAACTACAATGATTGTAAAGCCTGGCCCTGTGGTGGATTTCCTTCTTGAGAATCAGAGTGTTCAGAATCATGACCCAAACAGAATTGACTGGAACAAGGGAAAAAGAATGCTGAAGAACCTGAGAATCAAGGCTAATGGTATTGAGTTCAAAATCACTGGACTAAGTGATAAAACCTGCAGGAATCAGACGTTTCTATTAAAGCAAAAGGATGCAAATGGTGAAGTGCAGGAAAGTGAAATCACGGTTTATGACTACTTTACACGCCATAAAATTAGTAGCTTGAACGACTCTGCTGATATGCCATGCATCAATGTTGGCAAACCGAAACGCCCGTGTTATTTTCCAATAGAGCTATGTAAGTTGGTCCCGTTGCAGCGGTACACCAAGGCACTAACAAATTGGCAAAGGAGTAAGCTAGTTCTGAAGACAAGGCTAGAGCCCCATCGTAGACATGAACAATTGCAACATGTACCAAGCATAAGATATGATGATGAACCTATGCTTCACTCTTCTGGGATTACCATTGAACCTAACCTTACTAGAATCAATGCTCGTATACTGCAACCCCCACAGTTGTGTTTTTCAAACAATAATGAGTATCTTCTTTCAGATTCTATATGCGCTATGACGATTGAAAAATGGGCCATTGTAAACTTCTCAAGTGGGTGTGACACAAGAAACCTGGTCGGGCTCATTAGAAAGTGTGCTGCAGCTAAAGGATTGAACATTAATAAGCTAGTGGGAGTATTTGAAGAGGATCATCTCTTCAAACGTGATCCAGCACATGATGGTCCTTGGAAAAGGAAAAGTCTTGTTGAGGAAGGGGTTGTAACACAATGTATTGCACCATCACCAAAAATTAATGATCAGTACATTACCAATGTACTCTTGAAAATTAATGCAAAGTTTGGTGGGATGAATTCATATCTGCCAATAGAGCATCGTAGTTCCATTCCTTTTGTTTCTTCTGTGCCTACCTTAATTCTTGGAATGGATGTTTCTCATGGATCTCCTGGTCGATCAGATGTGCCTTCTATTGCTGCGGTTGTGAGCTCAAGATGTTGGCCTCAAATTTCACGTTATAGAGCTTCAGTTCGCACTCAGCCACCAAAAGTTGAGCTGATCCAATCTCTATTCCAACCTGTGGCTCATACTACTGATGATGAGGTTTTCCATGCTCTCTTTTTTCTGACTTATTCTTTTACGTATCATCTACTAATTCTGCATGTATTTTATTTTAGGGATGGAGTGAGTGAATCACAGTTCAACCAGGTGCTCAACATTGAGTTAAGTCAAATCATTGAGGCATGCAAACATGTTGATGAAAAGTGGGATCCCAAGTTCACTTTGATTGTTGCGCAGAAGAATCATCATACTAGCTTCTTCCAGGCCAACACTCAAGGAAATGCTCCACCTATAAAGAGAGAAAATGTTCCACCAGGAACCATTATTGACAACACTATCTGTCATCCCAGAAACAATGACTTCTACTTGTGTGCTCAAGCTGGGATGATTGGGACAACTCGACCTACTCACTACCATGTTTTGCATGATGAAATTGGGTTCACAGCTGATCAAATACAGGAGCTAGTGCATTCTCTATCTTATGTGTATCAGAGGAGCACAACTGCTGTGTCATTAGTTGCTCCCATTTGCTATGCCCACTTGGCAGCTGCTCAGATGGGACAATTTATGAAGTTTGATGAACATTCTGAGACTTCTTCCAGCCATGGTGGACTCACATCAGCTAGTGCACCTCTAGTACCTCAATTACCTCGTCTTCACAAAGATGTCATCGACACCATGTTCTTTTGTTAA 2535 0.417 MEASKRLPMARKGVGSKGETRQLLANHFRIRLARPNNDFDGYFYHYSVAMSYEDEHPAEAKGMGRKVLDQVCKTYDELRNKNFAYDGEKSLFTLGCLPSQNLQYTVVIEVVSARRVGREGNPDDHQSHDEGDAKRMKRQSWTKTIFVDIKYAAKIPLQAVADALRGQDSENSQEALRILDIILRQHAASKGCLLVRQSFFHNNDPNIDDDIGGGVLVCRGFHSSFRATQRGLSLNIDVSTTMIVKPGPVVDFLLENQSVQNHDPNRIDWNKGKRMLKNLRIKANGIEFKITGLSDKTCRNQTFLLKQKDANGEVQESEITVYDYFTRHKISSLNDSADMPCINVGKPKRPCYFPIELCKLVPLQRYTKALTNWQRSKLVLKTRLEPHRRHEQLQHVPSIRYDDEPMLHSSGITIEPNLTRINARILQPPQLCFSNNNEYLLSDSICAMTIEKWAIVNFSSGCDTRNLVGLIRKCAAAKGLNINKLVGVFEEDHLFKRDPAHDGPWKRKSLVEEGVVTQCIAPSPKINDQYITNVLLKINAKFGGMNSYLPIEHRSSIPFVSSVPTLILGMDVSHGSPGRSDVPSIAAVVSSRCWPQISRYRASVRTQPPKVELIQSLFQPVAHTTDDEVFHALFFLTYSFTYHLLILHVFYFRDGVSESQFNQVLNIELSQIIEACKHVDEKWDPKFTLIVAQKNHHTSFFQANTQGNAPPIKRENVPPGTIIDNTICHPRNNDFYLCAQAGMIGTTRPTHYHVLHDEIGFTADQIQELVHSLSYVYQRSTTAVSLVAPICYAHLAAAQMGQFMKFDEHSETSSSHGGLTSASAPLVPQLPRLHKDVIDTMFFC 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00159 844 FunFam Protein argonaute 3 557 844 - -
Pumo11g00159 844 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 15 807 - -
Pumo11g00159 844 CDD PAZ_argonaute_like 246 361 - -
Pumo11g00159 844 Pfam PAZ domain 258 378 IPR003100 GO:0005515
Pumo11g00159 844 ProSiteProfiles Piwi domain profile. 484 805 IPR003165 GO:0003676
Pumo11g00159 844 Pfam Piwi domain 504 805 IPR003165 GO:0003676
Pumo11g00159 844 SUPERFAMILY PAZ domain 241 396 IPR036085 GO:0005515
Pumo11g00159 844 Gene3D - 556 844 IPR036397 GO:0003676
Pumo11g00159 844 ProSiteProfiles PAZ domain profile. 288 362 IPR003100 GO:0005515
Pumo11g00159 844 SMART Piwi_a_2 484 805 IPR003165 GO:0003676
Pumo11g00159 844 Pfam Argonaute linker 1 domain 195 244 IPR014811 -
Pumo11g00159 844 Pfam N-terminal domain of argonaute 22 183 IPR032474 -
Pumo11g00159 844 Gene3D paz domain 240 366 - -
Pumo11g00159 844 SMART DUF1785_2 193 246 IPR014811 -
Pumo11g00159 844 Gene3D - 493 554 - -
Pumo11g00159 844 SUPERFAMILY Ribonuclease H-like 505 803 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00159 Pumo-Chr11 3972200 3980214 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00159 6 844 Eukaryotic Initiation Factors Gene Family AT1G48410 32.166 2.81e-125 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00159 K11593 - gmx:100812218 1168.3