Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00158 ATGGAGACCTCAAAGCGTTTGCCTATGGCTAGGAAAGGAATTGGATCCAAGGGAGAGACCAGACAGCTATTAGCTAACCATTTTAGAATTCGCCTATCCAGGCCCAACAATGATTTTGATGGCTACTTCTACCATTATAGTGTTGCCATGAGTTACGAAGATGGACACCCAGCTGAAGCCAAGGGTATGGGGAGAAAAGTCCTAGATCAAGTTTGTAAAACATACGATGAACTGAGGAACACAAATTTTGCATACGATGGTGAAAAAAGTTTATTCACTCTTGGTTGTCTACCAAGTCAGAATCTTCAATACACTGTTGTGATAGAAGTTGTTTCAGCAAGGAGGGTTCTGGACATCATACTGAGACAACATGCTGCAAGCAAGGGATGCCTCCTTGTTCGCCAATCCTTCTTTCATAACAATGATCCAAACATTGATGACGACATAGGAGGTGGTGTGCTAGTGTGCCGTGGTTTTCATTCAAGCTTTCGAGCCACACAAAGAGGTTTATCTCTCAACATTGCTATGACGATTGAAAAATGGGCCATTGTAAACTTCTCAAGTGGGTGTGACACAAGAAACCTGGTCGGGCTCATTAGAAAGTGTGCTGCAGCTAAAGGGATGAACATTGATAAGCTAGTGGGAGTATTTGAAGAGGATCATCTCTTCAAACGTGATCCAGCACATGTCAGGGTAGAGAAAATGTACGCAAAGTTGAAGGACACTCTGTTCAATAGACCTAACCTTCTGCTGTGTATTCTTCCGGAGAAATTTAGCTTCTATTGTCCTTGGAAAAGGAAAAGTCTTGTTGAGGAAGGGGTTGTAACACAATGTATTTCACCATCACCAAAAATTAATGATCAGTACATTACCAATGTACTCTTGAAAATTAATGCAAAGTTTGGTGGGATGAATTCATATCTGGCAATAGAGCATCGTAGTTCCATTCCTTTTGTTTCTTCTGTGCCTACCTTAATTCTTGGAATGGATGTTGTGAGCTCAAGATGTTGGCCTCAAATTTCACGTTATAGAGCTTCAGTTCGCACTCAGCCACCAAAAGTTGAGCTGATCCAATCTCTATTCCAACCTGTGGCTCATACTACTGATGATGAGGGTATCATCAGGGAGGTGCTATTAGACTTTTATGAAACTTCAAGAAAAAGGAATCCTCAACAAATTATAATTTTCAGGGATGGAGTGAGTGAATCACAGTTCAACCAGGTGCTCAACATTGAGTTAAGTCAAATCATTGAGGCATGCAAACATCTTGATGAAAAGTGGGATCCCAAGTTCACTTTGATTGTTGCACAGAAGAATCATCATACTAGGTTCTTCCAGGCCAACACTCAAGGAAATGCTCCACCTATAAAGAGAGAAAATGTTCCACCAGGAACCATTATTGACAACACTATCTGTCATCCCAGAAACAATGACTTCTACCTGTGTGCTCAAGCTGGGATGATTAGGAGCACAACTGCTGTGTCATTAGTTGCTCCCATTTGCTATGCCCACTTGGCAGCTGCTCAGATGGGACAATTTATGAAGTTTGATGAACATTCTGAGACTTCTTCCAGCCATGGTGGACTCACATCAGCTAGCGCACCTCTAGTACCTCAATTACCTAGTCTTCACAAAGATGTCATCAACACCATGTTCTTTTGTTAA 1665 0.4162 METSKRLPMARKGIGSKGETRQLLANHFRIRLSRPNNDFDGYFYHYSVAMSYEDGHPAEAKGMGRKVLDQVCKTYDELRNTNFAYDGEKSLFTLGCLPSQNLQYTVVIEVVSARRVLDIILRQHAASKGCLLVRQSFFHNNDPNIDDDIGGGVLVCRGFHSSFRATQRGLSLNIAMTIEKWAIVNFSSGCDTRNLVGLIRKCAAAKGMNIDKLVGVFEEDHLFKRDPAHVRVEKMYAKLKDTLFNRPNLLLCILPEKFSFYCPWKRKSLVEEGVVTQCISPSPKINDQYITNVLLKINAKFGGMNSYLAIEHRSSIPFVSSVPTLILGMDVVSSRCWPQISRYRASVRTQPPKVELIQSLFQPVAHTTDDEGIIREVLLDFYETSRKRNPQQIIIFRDGVSESQFNQVLNIELSQIIEACKHLDEKWDPKFTLIVAQKNHHTRFFQANTQGNAPPIKRENVPPGTIIDNTICHPRNNDFYLCAQAGMIRSTTAVSLVAPICYAHLAAAQMGQFMKFDEHSETSSSHGGLTSASAPLVPQLPSLHKDVINTMFFC 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00158 554 Gene3D - 315 488 IPR036397 GO:0003676
Pumo11g00158 554 Gene3D - 489 554 IPR036397 GO:0003676
Pumo11g00158 554 Pfam Piwi domain 250 489 IPR003165 GO:0003676
Pumo11g00158 554 SMART Piwi_a_2 249 515 IPR003165 GO:0003676
Pumo11g00158 554 Pfam N-terminal domain of argonaute 22 106 IPR032474 -
Pumo11g00158 554 Gene3D - 161 309 - -
Pumo11g00158 554 SMART DUF1785_2 131 179 IPR014811 -
Pumo11g00158 554 ProSiteProfiles Piwi domain profile. 249 481 IPR003165 GO:0003676
Pumo11g00158 554 SUPERFAMILY Ribonuclease H-like 234 513 IPR012337 -
Pumo11g00158 554 Pfam Argonaute linker 1 domain 133 174 IPR014811 -
Pumo11g00158 554 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 15 176 - -
Pumo11g00158 554 SUPERFAMILY PAZ domain 101 178 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00158 Pumo-Chr11 3939354 3946565 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00158 175 554 Eukaryotic Initiation Factors Gene Family AT5G43810 32.063 3.14e-56 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00158 K11593 - gmx:100812218 561.992