Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00154 ATGGAGACCTCAAAGCGTTTGCCTATGGCTAGGAAAGGAATTGGATCCAAGGGAGAGACCAGACAGCTATTAGCTAACCATTTTAGAATTCGCCTATCCAGGCCCAACAATGATTTTGATGGCTACTTCTACCATTATAGTGTTGCCATGAGTTACGAAGATGGACACCCAGCTGAAGCCAAGGGTATGGGGAGAAAAGTCCTAGATCAAGTTTGTAAAACATACGATGAACTGAGGAACACAAATTTTGCATACGATGGTGAGAAAAGTTTATTCACTCTTGGTTGTCTACCAAGTCAGAATCTTCAATACACTGTTGTGATAGAAGTTGTTTCAGCAAGGAGGGTTGGAAGGGAAGGAAACCCTGATGATCATCAGAGTCATGATGAAGGAGATGCAAAAAGAATGAAGCGTCAATCTTGGACCAAAACCATCTTTGTGGATATCAAATATGCAGCCAAAATCCCATTGCAAGCAGTTGCAGATGCATTGCGTGGTCAGGATTCTGAGAACTCTCAGGAAGCACTGAGGATTCTGGACATCATACTGAGACAACATGCTGCAAGCAAGGGATGCCTCCTTGTTCGCCAATCCTTCTTTCATAACAATGATCCAAACATTGATGACGACATAGGAGGTGGTGTGCTAGTGTGCCGTGGTTTTCATTCAAGCTTTCGAGCCACACAAAGAGGTTTATCTCTCAACATTGATGTGTCAACTACAATGATTGTAAAGCCTGGCCCTGTGGTGGATTTCCTTCTCGAGAATCAGAGTGTTCAGAATCATGACCCAAACAGAATTGACTGGAACAAGGGAAAAAGAATGCTGAAGAACCTGAGAATCAAGGCTAATGGTATTGAGTTCAAAATCACTGGACTAAGTGATAAAACCTGCAGGAATCAGACGTTTCTATTAAAGCAAAAGGATGCAAATGGTGAAGTGCAGGAAAGTGAAATCACGGTTTATGACTACTTTACACGCCATAAAATTAGTAGCTTGAACGACTCTGCTGATATGCCATGCATCAATGTTGGCAAACCGAAACGCCCGTGTTATTTTCCAATAGAGCTATGTAAGTTGGTCCCGTTGCAGCGGTACACCAAGGCACTAACAAATTGGCAAAGGAGTAAGCTAGTTCTGAAGACAAGGCTAGAGCCCCATCGTAGACATGAACAATTGCAACATGTACCAAGCATAAGATATGATGATGAACCTATGCTTCACTCTTCTGGGATTACCATTGAACCTAACCTTACTAGAATCAATGCTCGTATACTGCAACCCCCACAGCTTATAGTTGGAGGGGCAAACATCATCATTCCCCGGAATGGGCGCTGGAATTTCAACAATAAGATTCTATATGACGCTAAGACGATTGAAAAATGGGCCATTGTAAACTTCTCAAGTGGGTGTGACACAAGAAACCTGGTCGGGCTCATTAGAAAGTGTGCTGCAGCTAAAGGATTGAACATTGATAAGCTAGTGGGAGTATTTGAAGAGGATCATCTCTTCAAACGTGATCCAGCACATGTCAGGGTAGAGAAAATGTACGCAAAGTTGAAGGACACTCTGTTCGATAGACCTAACCTTCTGCTGTGTATTCTTCCGGAGAAAAAGAATTGTGATATTTATGGTCCTTGGAAAAGGAAAAGTCTTGTTGAGGAAGGGGTTGTAACACAATGTATTGCACCATCACCAAAAATTAATGATCAGTACATTACCAATGTACTCTTGAAAATTAATGCAAAGTTTGGTGGGATGAATTCATATCTGGCACTAGAGCATCGTAGTTCCATTCCTTTTGTTTCTTCTGTGCCTACCTTAATTCTTGGAATGGATGTTTCTCATGGATCTCCTGGTCGATCAGATGTGCCTTCTATTGCTGCGGTTGTGAGCTCAAGATGTTGGCCTCGAATTTCACGTTATAGAGCTTCAGTTCGCACTCAGCCACCAAAAGTTGAGCTGATCCAATCTCTATTCCAACCTGTGGCTCATACTACTGATGATGAGGGTATCATCAGGGAGGTGCTATTAGACTTTTATGAAACTTCAAGAAAAAGGAAGCCTCAACAAATTATAATTTTCAGGGATGGAGTGAGTGAATCACAGTTCAACCAGGTGCTCAACATTGAGTTAAGTCAAATCATTGAGGCATGCAAACATCTTGATGAAAAGTGGGATCCCAACTTCACTTTGATTGTTGCACAGAAGAATCATCATACTAGGTTCTTCCAGGCCAACACTCAAGGAAATGCTCCACCTATAAAGAGAGAAAATGTTCCACCAGGAACCATTATTGACAACACTATCTGTCATCCCAGAAACAATGACTTCTACTTGTGTGCTCAAGCTGGGATGATTGGGACAACTCGACCTACTCACTACCATGTTTTGCATGATGAAATTGGGTTCACAGCTGATCAAATACAGGAGCTAGTGCATTCTCTATCTTATGTGTATCAGAGGAGCACAACTGCTGTGTCATTAGTTGCTCCCATTTGCTATGCCCACTTGGCAGCTGCTCAGATGGGACAATTTATGAAGTTTGATGAACATTCTGAGACTTCTTCCAGCCATGGTGGACTCACATCAGCTAGTGCACCTCTAGTACCTCAATTACCTCGTCTTCACAAAGATGTCATCGACACCATGTTCTTTTGTTAA 2664 0.4223 METSKRLPMARKGIGSKGETRQLLANHFRIRLSRPNNDFDGYFYHYSVAMSYEDGHPAEAKGMGRKVLDQVCKTYDELRNTNFAYDGEKSLFTLGCLPSQNLQYTVVIEVVSARRVGREGNPDDHQSHDEGDAKRMKRQSWTKTIFVDIKYAAKIPLQAVADALRGQDSENSQEALRILDIILRQHAASKGCLLVRQSFFHNNDPNIDDDIGGGVLVCRGFHSSFRATQRGLSLNIDVSTTMIVKPGPVVDFLLENQSVQNHDPNRIDWNKGKRMLKNLRIKANGIEFKITGLSDKTCRNQTFLLKQKDANGEVQESEITVYDYFTRHKISSLNDSADMPCINVGKPKRPCYFPIELCKLVPLQRYTKALTNWQRSKLVLKTRLEPHRRHEQLQHVPSIRYDDEPMLHSSGITIEPNLTRINARILQPPQLIVGGANIIIPRNGRWNFNNKILYDAKTIEKWAIVNFSSGCDTRNLVGLIRKCAAAKGLNIDKLVGVFEEDHLFKRDPAHVRVEKMYAKLKDTLFDRPNLLLCILPEKKNCDIYGPWKRKSLVEEGVVTQCIAPSPKINDQYITNVLLKINAKFGGMNSYLALEHRSSIPFVSSVPTLILGMDVSHGSPGRSDVPSIAAVVSSRCWPRISRYRASVRTQPPKVELIQSLFQPVAHTTDDEGIIREVLLDFYETSRKRKPQQIIIFRDGVSESQFNQVLNIELSQIIEACKHLDEKWDPNFTLIVAQKNHHTRFFQANTQGNAPPIKRENVPPGTIIDNTICHPRNNDFYLCAQAGMIGTTRPTHYHVLHDEIGFTADQIQELVHSLSYVYQRSTTAVSLVAPICYAHLAAAQMGQFMKFDEHSETSSSHGGLTSASAPLVPQLPRLHKDVIDTMFFC 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00154 887 SUPERFAMILY Ribonuclease H-like 515 846 IPR012337 -
Pumo11g00154 887 CDD PAZ_argonaute_like 246 361 - -
Pumo11g00154 887 SUPERFAMILY PAZ domain 241 396 IPR036085 GO:0005515
Pumo11g00154 887 Pfam N-terminal domain of argonaute 22 183 IPR032474 -
Pumo11g00154 887 CDD Piwi_ago-like 405 842 IPR045246 -
Pumo11g00154 887 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 15 850 - -
Pumo11g00154 887 Gene3D - 425 592 - -
Pumo11g00154 887 ProSiteProfiles PAZ domain profile. 288 362 IPR003100 GO:0005515
Pumo11g00154 887 ProSiteProfiles Piwi domain profile. 530 848 IPR003165 GO:0003676
Pumo11g00154 887 SMART DUF1785_2 193 246 IPR014811 -
Pumo11g00154 887 Gene3D - 598 887 IPR036397 GO:0003676
Pumo11g00154 887 Pfam PAZ domain 258 378 IPR003100 GO:0005515
Pumo11g00154 887 Gene3D paz domain 240 366 - -
Pumo11g00154 887 Pfam Piwi domain 531 848 IPR003165 GO:0003676
Pumo11g00154 887 FunFam Protein argonaute 3 599 887 - -
Pumo11g00154 887 SMART Piwi_a_2 530 848 IPR003165 GO:0003676
Pumo11g00154 887 Pfam Argonaute linker 1 domain 195 244 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00154 Pumo-Chr11 3835020 3843813 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00154 6 887 Eukaryotic Initiation Factors Gene Family AT1G48410 33.874 3.44e-143 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00154 K11593 - gmx:100812218 1326.61