Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00152 ATGTACGCAAAGTTGAAGGACACTCTGTTCGATAGACCTAACCTTCTGCTGTGTATTCTTCCGGAGAAAAAGAATTGTGATATTTATGGTCCTTGGAAAAGGAAAAGTCTTGTTGAGGAAGGGGTTGTAACACAATGTATTGCACCATCACCAAAAATTAATGATCAGTACATTACCAATGTACTCTTGAAAATTAATGCAAAGTTTGGTGGGATGAATTCATATCTGGCACTAGAGCATCGTAGTTCCATTCCTTTTGTTTCTTCTGTGCCTACCTTAATTCTTGGAATGGATGTTTCTCATGGATCTCCTGGTCGATCAGATGTGCCTTCTATTGCTGCGGTTGTGAGCTCAAGATGTTGGCCTCGAATTTCACGTTATAGAGCTTCAGTTCGCACTCAGCCACCAAAAGTTGAGCTGATCCAATCTCTATTCCAACCTGTGGCTCATACTACTGATGATGAGGGTATCATCAGGGAGGTGCTATTAGACTTTTATGAAACTTCAAGAAAAAGGAAGCCTCAACAAATTATAATTTTCAGGGATGGAGTGAGTGAATCACAGTTCAACCAGGTGCTCAACATTGAGTTAAGTCAAATCATTGAGGCATGCAAACATCTTGATGAAAAGTGGGATCCCAACTTCACTTTGATTGTTGCACAGAAGAATCATCATACTAGGTTCTTCCAGGCCAACACTCAAGGAAATGCTCCACCTATAAAGAGAGAAAATGTTCCACCAGGAACCATTATTGACAACACTATCTGTCATCCCAGAAACAATGACTTCTACTTGTGTGCTCAAGCTGGGATGATTGGGACAACTCGACCTACTCACTACCATGTTTTGCATGACGAAATTGGGTTCACAGCTGATCAAATACAGGAGCTAGTGCATTCTCTATCTTATGTGTATCAGAGGAGCACAACTGCTGTGTCATTAGTTGCTCCCATTTGCTATGCCCACTTGGCAGCTGCTCAAATGGGACAATTTATGAAGTTTGATGAACATTCTGAGACTTCTTCCAGCCATGGTGGACTCACATCAGCTAGTGCACCTCTAGTACCTCAATTACCTCGTCTTCACAAAGATGTCATCGACACCATGTTCTTTTGTTAA 1119 0.4147 MYAKLKDTLFDRPNLLLCILPEKKNCDIYGPWKRKSLVEEGVVTQCIAPSPKINDQYITNVLLKINAKFGGMNSYLALEHRSSIPFVSSVPTLILGMDVSHGSPGRSDVPSIAAVVSSRCWPRISRYRASVRTQPPKVELIQSLFQPVAHTTDDEGIIREVLLDFYETSRKRKPQQIIIFRDGVSESQFNQVLNIELSQIIEACKHLDEKWDPNFTLIVAQKNHHTRFFQANTQGNAPPIKRENVPPGTIIDNTICHPRNNDFYLCAQAGMIGTTRPTHYHVLHDEIGFTADQIQELVHSLSYVYQRSTTAVSLVAPICYAHLAAAQMGQFMKFDEHSETSSSHGGLTSASAPLVPQLPRLHKDVIDTMFFC 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00152 372 Gene3D - 1 82 - -
Pumo11g00152 372 Gene3D - 83 372 IPR036397 GO:0003676
Pumo11g00152 372 Pfam Piwi domain 16 333 IPR003165 GO:0003676
Pumo11g00152 372 CDD Piwi_ago-like 1 327 IPR045246 -
Pumo11g00152 372 ProSiteProfiles Piwi domain profile. 15 333 IPR003165 GO:0003676
Pumo11g00152 372 SUPERFAMILY Ribonuclease H-like 5 331 IPR012337 -
Pumo11g00152 372 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 11 335 - -
Pumo11g00152 372 FunFam Protein argonaute 3 84 372 - -
Pumo11g00152 372 SMART Piwi_a_2 15 333 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00152 Pumo-Chr11 3788971 3793637 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00152 15 372 Eukaryotic Initiation Factors Gene Family AT5G43810 43.324 2.00e-87 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00152 K11593 - gmx:100812218 640.958