Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00149 ATGGAGGCCCCAAAACGTTTGCCTATGGCTAGGAAAGGAACAGGATCCAAGGGACAGAGCATACAACTATTTGCTAACCATTTTAAAGTTAGCATGGGCAAGAATGATGACTACTTCTACCATTATGATGTTGCCATGAGTTATGAAGATGGGAACCCTGTTGAAGCCAAGGGTGTAGGGAGAAAGGTGCTAGATCAAGCTTGCAAAACATATGTTGAACTGAGAAACATAAGTTTTGCATATGATGGTGAGAAAACTTTATTCACTCTTGGTCCTCTACCAAGTCAGAGGCTTCAATACCCTGTTGTGCTAGAGGATGTTTCATCAAGAAGGGTTGGAAAGAATGGAAGCCCTGATCAGAGTCTTAAGGGAGGAGATACAAAAAGAATGAGAATGAGGCATCAATCACGGTCCAAAACTATCAATATGGATGTCAAATATGCAGCCAAAATCCCATTGCAAGCAATTGCAGATGCATTGCATGGTCAGGATTCTGAGAAATCTCAGGATGCAATTAGGGTTCTAGACATCATACTGAGACAGCATTCTGCAAACCAGGGATGCCTCCTTGTTCGCCAATCCTTCTTTCATGACAATCCAAGAATTTATACTGATGCTCAAAATGATATAGGAGGTGGTGTGCGAGTGTGCCGTGGTTTTCATTCAAGCTTTCGAGCCACACAAGGAGGCTTATCTCTCAACATTGATGTGGCAACTACAATGATTGTAAAGCCTGGCCCTGTGGTGGATTTCCTTCTCCAGAATCAGAGTGTTCAGAACCCAAACTACATTGATTGGATCAAGGCAAAAAGAATGCTGAAGAACCTAAGAATCAATGCCAATGGTATTGAATTTAAAATCACTGGATTGAGTGATAACACTTGCAGGAATCAGAAATTTCTATTGAGGCAAAAGGGTACGAATGGTGAAGTGCAGGAAAGGGAAATCACGGTTCATGACTACTTTACACGCCATAAAATGATTGGCCTGAAGTACTCTGCTGATATGCCATGCATCAATGTTGGCAAACCAAAACACCCATCTTATTTTCCAATAGAGCTATGTGAATTGGTCTCGTTGCAGCGGTACACCAAGGCACTAACAAATTTGCAAAGGGCTCAGCTAGTGGAGAAGACAAGGCAAAAGCCCCAAGAAAGGAGAGCAGCTTTAGAAGATTCCTTAAGAAGCAGCAGATATGGTGATGAACCTATGCTTCGCTCTTCTGGAATTACCATTGAACCTAACTTTACTAGACTCGAGGGTCGTGTATTGCAACCCCCAAAGCTTATAGTTGGAAGGGAGGAGAACATCATTCCCCGGAATGGCCGCTGGAATTTCAACAATAAGGTTGATTTTTGGTGTTGTTTTTGGTGGTGTTTTAATGTTACGGTTGTGTTTGTATTGGCGTTTAGCACATTGAATGCCAAAGCTTCTTCTCAATAA 1443 0.4213 MEAPKRLPMARKGTGSKGQSIQLFANHFKVSMGKNDDYFYHYDVAMSYEDGNPVEAKGVGRKVLDQACKTYVELRNISFAYDGEKTLFTLGPLPSQRLQYPVVLEDVSSRRVGKNGSPDQSLKGGDTKRMRMRHQSRSKTINMDVKYAAKIPLQAIADALHGQDSEKSQDAIRVLDIILRQHSANQGCLLVRQSFFHDNPRIYTDAQNDIGGGVRVCRGFHSSFRATQGGLSLNIDVATTMIVKPGPVVDFLLQNQSVQNPNYIDWIKAKRMLKNLRINANGIEFKITGLSDNTCRNQKFLLRQKGTNGEVQEREITVHDYFTRHKMIGLKYSADMPCINVGKPKHPSYFPIELCELVSLQRYTKALTNLQRAQLVEKTRQKPQERRAALEDSLRSSRYGDEPMLRSSGITIEPNFTRLEGRVLQPPKLIVGREENIIPRNGRWNFNNKVDFWCCFWWCFNVTVVFVLAFSTLNAKASSQ 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00149 480 Pfam PAZ domain 249 375 IPR003100 GO:0005515
Pumo11g00149 480 CDD PAZ_argonaute_like 245 358 - -
Pumo11g00149 480 Gene3D paz domain 239 363 - -
Pumo11g00149 480 Pfam Argonaute linker 2 domain 385 429 IPR032472 -
Pumo11g00149 480 Pfam N-terminal domain of argonaute 19 179 IPR032474 -
Pumo11g00149 480 Pfam Argonaute linker 1 domain 191 243 IPR014811 -
Pumo11g00149 480 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 15 456 - -
Pumo11g00149 480 ProSiteProfiles PAZ domain profile. 285 359 IPR003100 GO:0005515
Pumo11g00149 480 SUPERFAMILY PAZ domain 240 398 IPR036085 GO:0005515
Pumo11g00149 480 MobiDBLite consensus disorder prediction 109 137 - -
Pumo11g00149 480 SMART DUF1785_2 189 245 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00149 Pumo-Chr11 3773685 3776439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00149 6 456 Eukaryotic Initiation Factors Gene Family AT1G48410 29.958 7.00e-53 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00149 K11593 - gmx:100812218 756.518