Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00132 ATGGCTTTGAGGGTTATAGTGATTTCGACGGTTTCTACAGTATTAAGCTTTGTGGGTCTGCAGTTTTGCACAGACTTCTCTTTGGATAAACTTAGATCAGATGGACTAATCGACTGGAATTTAATTCACTTGGACAATGCCAGCCAAGACATTGAGTTGCCTTTGGGTTTGTACACCACCATAGGGCTACTGGTGAATTGCATGATCAATGTATTTATCCTTCTCAATCTTTGCCTCAAGGCTGTGTTTTTCACGGAGTTATATGCTTCTGAAACTCGTAAACTGGTTGAACGTCTCATTAATTATGTCATTTACAAGGGGACATTTCTACCACTGATTGTGCCACCAACAATTTATCAAGCAGGTCTTTGGTCAACTTGGTTGACTGTGCTTTGTTCTTTGAAGATGTTTCAAGCTTTGGCTAGAGATCGTTTGGAACGGCTGAATGCATCTCCGTCTGCTACACCCTGGACATATCTTCGTGTATATTCAGCATTGTTATTTGTTTTCATGGTTGATGTTCTCTGGATAAGGTTTTGTCTGACAATATATAGAACACATGGGTCCTCTATGTATCTGTTATTATTCTTTGAGCCTTTCAGTATTGCTTTTGAGACTCTACAGGCCATTTTGGTACATGGATTTCAGTTGCTTGACATATGGATGCATCATTCAGCTTGCAATAGCAGTGATTTCCGAACACCTAAACTGCTTGACACGTTAACTGCAGGTTCATTGTTGGAGTGGAAGGGAATTCTCATTCGGAACTTGGGGTTTTTCTTAGACATGGCAACATTTTTTATGGCACTTGGCCATTACTTGTATATATGGCGGCTTCATGGCATGGCTTTCCATCTAGTAGATGCAGTGCTGTTTCTAAATATACGTGCATTGCTTAGTGCAATAATAAATCGCATAAAAGGCTTTATCAAGCTAAGGATAGCTCTAGGAACACTTCATGCAGCTCTTCCTGATGCAACAACTGAGGAGCTAAGAGCATATGATGATGAATGTGCTATTTGTAGAGAACCAATGGCTAAGGCTAAAAAGCTAAACTGCAATCATCTCTTCCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTATACTTGTCCAACATGCCGAAAGCCACTTTTTGCGGGTGTGCCTGAAAATGAAACAAACTCCAATGCAGGGACGATATCTAGTGATGAGCAACTTGCACGACAAATAAGTGCTGGATTGGATCGGCCAAACCCTGCTAGGCATACCATGCCTACAGGATTGTATCCAAATCAGACACTAAACACTCCTGAAGGTGTTCCTTGGAGGGGTGCAGGGCTGGACTCAGGTTGGTTGCATTCTTGGCCAAATCAAGGTGTTGATGGGGCCGGTCCATCTACTGCTATCAGAACAGTTGGATTGGGTAGAGTTCAAATGATGATGAGGCATCTTGCATCTGTTGGAGAAACCTATGCTCAGACTGCCTTTGAAGATACTGCGTGGAACCTTTGGCCCATTAATCCCTCTCAGGCTTCTGCAAGTGGTTCAACCGTTCCTCCCCTGGTGGAAGATTGCCAGAAAGAACTGGTAGTTTACATTTTAGGACTGCTTCACAGTCTGGTAATGATAATGTTGCGAACATACTTGCCATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATTCCAGATGACATGA 1695 0.4271 MALRVIVISTVSTVLSFVGLQFCTDFSLDKLRSDGLIDWNLIHLDNASQDIELPLGLYTTIGLLVNCMINVFILLNLCLKAVFFTELYASETRKLVERLINYVIYKGTFLPLIVPPTIYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFVFMVDVLWIRFCLTIYRTHGSSMYLLLFFEPFSIAFETLQAILVHGFQLLDIWMHHSACNSSDFRTPKLLDTLTAGSLLEWKGILIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAIINRIKGFIKLRIALGTLHAALPDATTEELRAYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFAGVPENETNSNAGTISSDEQLARQISAGLDRPNPARHTMPTGLYPNQTLNTPEGVPWRGAGLDSGWLHSWPNQGVDGAGPSTAIRTVGLGRVQMMMRHLASVGETYAQTAFEDTAWNLWPINPSQASASGSTVPPLVEDCQKELVVYILGLLHSLVMIMLRTYLPWLRLFGRFYLIFQMT 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00132 564 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 386 IPR013083 -
Pumo11g00132 564 SMART ring_2 338 379 IPR001841 -
Pumo11g00132 564 SUPERFAMILY RING/U-box 325 386 - -
Pumo11g00132 564 FunFam E3 ubiquitin protein ligase RIN2 311 390 - -
Pumo11g00132 564 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 10 514 - -
Pumo11g00132 564 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Pumo11g00132 564 Pfam Ring finger domain 336 380 IPR001841 -
Pumo11g00132 564 CDD RING-H2_AMFR 336 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00132 Pumo-Chr11 3564055 3572976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00132 57 421 C3H Transcription Factor Family AT3G16090 27.157 1.11e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00132 K10636 - gmx:100819656 1006.51