Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00112 ATGTATGATCAAAACTCTAGCAAGGATGTGCAACTAGCAACTACACTTCCGTCACCTAATAGGCAGGCAAAATTTAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGCCCAAGGACTGCATGCAGTAGCTCAAAGTGAGAAAATTGAAGCATCCCGAAAGCTGAATGACCTAAGCAGGAGACGATCAGAAGAAACCATGAAAATGAAAGAGATTATTGCTAAGGAGGAGAAGGCAAAAGAATTAGCAAAACTAGAAAGAGAGAAATATCAAGATGCATCGAGAGAAGCTGAATATTTGAAAGAATGTGCTGAAAGAGAAGCTGCAGAAAGGAAAGAAACGGAGTTGAAAGCCATTCGTGCTGCAAAAGAGAAAGAAAAGCTGGAGGATGCTCTAAGTGGTTCCACGCCCCAGTACCGGAAGTTTACATGGGATGAAATAGTCTTAGCTACTTCATCTTTCTCTGAAGATCTGAAAATTGGAATGGGAGCGTATGGAATAGTGTATAGGTGCAATTTGTATCACACAACTGTTGCTGTGAAAGTTCTCAACACTGATGAAAACCGCAAAAGCAAGCAATTCCAGCAGGAGTTAGAGATTTTGAGCAGAATTCGTCATCCAAACTTGCTTCTTCTTCTTGGTGCATGTCCCGATCATGGATGCCTTGTGTATGAATATATGGAGAATGGTAACTTGGAAGACAGGCTACTACGGAAAAACAACACTGCCCCAATCCCATGGTTTGAGAGGTTTCGAATAGCTTGGGAAGTTGCATCAGCTCTCGCCTTTCTTCATAGCTCAAAGCCAGAACCTATCATTCATCGTGACTTGAAACCGGCAAACATCTTGCTTGATCGTAACCTTGTCAGTAAGATTGGTGACATTGGCCTTTCTACGGTGCTTCATTCGGATAATTTGTCTACGATGTACAAGGACACTGCACCTGTTGGGACACTCTGCTACATAGATCCTGAGTATCAAAGGACTGGGTTAATATCTCCAAAATCTGATGTTTATGCTTTTGGAATGGTGATCTTACAGTTATTGACAGCAAAACCAGCAATAGCACTTGCTCATAAGGTTGAAACAGCTATTGATGGCGGGAATTTAACAGACATATTGGATCCAGAGGCAGGAGCTTGGCCATTTCAAGAGACACTAGACTTGGCTTTGCTAGGACTGAGCTGTGCAGAACTTCGGCGTAGAGACCGGCCTGATTTACAGGATCACGTGCTTCCAACACTTGAGAGATTGAAAGACGTTGTTGATAGGGCCCAACATTCTGCTTCAACTGTTACTATTAAATCCAAACCTCCTAATCACTTTATCTGTCCAATACTTCAGGATGTGATGGATGACCCTTCTGTTGCTGCTGATGGATATACATATGATCGCAAAGCAATTGAAAAATGGCTTGAAGAGAACGACAAATCACCAATGACAAACATGGCTTTACCTCATAAGCATTTAATTCCTAATTACACACTTCTCTCAGCAATTTTGGAGTGGAAGTCCAGAGAATCGTGA 1533 0.4194 MYDQNSSKDVQLATTLPSPNRQAKFNLELEKLRIELRHAQGLHAVAQSEKIEASRKLNDLSRRRSEETMKMKEIIAKEEKAKELAKLEREKYQDASREAEYLKECAEREAAERKETELKAIRAAKEKEKLEDALSGSTPQYRKFTWDEIVLATSSFSEDLKIGMGAYGIVYRCNLYHTTVAVKVLNTDENRKSKQFQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGNLEDRLLRKNNTAPIPWFERFRIAWEVASALAFLHSSKPEPIIHRDLKPANILLDRNLVSKIGDIGLSTVLHSDNLSTMYKDTAPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAIALAHKVETAIDGGNLTDILDPEAGAWPFQETLDLALLGLSCAELRRRDRPDLQDHVLPTLERLKDVVDRAQHSASTVTIKSKPPNHFICPILQDVMDDPSVAADGYTYDRKAIEKWLEENDKSPMTNMALPHKHLIPNYTLLSAILEWKSRES 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00112 510 Coils Coil 29 49 - -
Pumo11g00112 510 Coils Coil 70 133 - -
Pumo11g00112 510 SMART Ubox_2 443 505 IPR003613 GO:0004842|GO:0016567
Pumo11g00112 510 ProSiteProfiles U-box domain profile. 439 510 IPR003613 GO:0004842|GO:0016567
Pumo11g00112 510 CDD RING-Ubox_WDSUB1-like 441 495 - -
Pumo11g00112 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 440 510 IPR013083 -
Pumo11g00112 510 SUPERFAMILY Protein kinase-like (PK-like) 138 410 IPR011009 -
Pumo11g00112 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Pumo11g00112 510 Gene3D Phosphorylase Kinase; domain 1 124 228 - -
Pumo11g00112 510 ProSitePatterns Protein kinases ATP-binding region signature. 162 183 IPR017441 GO:0005524
Pumo11g00112 510 SMART serkin_6 156 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00112 510 ProSiteProfiles Protein kinase domain profile. 156 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00112 510 Gene3D Transferase(Phosphotransferase) domain 1 229 439 - -
Pumo11g00112 510 SUPERFAMILY RING/U-box 438 508 - -
Pumo11g00112 510 Pfam Protein kinase domain 158 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo11g00112 510 PANTHER OS02G0152300 PROTEIN 18 504 - -
Pumo11g00112 510 Pfam U-box domain 441 508 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00112 Pumo-Chr11 3293027 3296144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00112 20 507 U-box Gene Family AT4G25160 63.211 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pumo11g00112 Pkinase 1.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00112 - - gsj:114409387 912.909