Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00108 ATGGCCGCTCCTCTTTATAGTGCCTTCAACGGCGAAATCGATGGTGAAAATCTACCTCTTGCTTTTGATATTTGGGCAACTGAACTCTGTGGCTGTGGCTATTATCATCAATATCATCAACCTATTTCGGAGAATAACACTTCTACATTGGTTTTCCCCTTTTGCGATGGCCCCACGATCAGGGATAACAAAAGGGTCAAGAGAACCGTGTGCTTCCCCATTTATAACAGCATTAATTGCCATAGTTTCCTCAACACCAACACCAACAACCCCAACAGCAGTAGTAAAAATAGCATACCTAAACTCCATTTCAGAGATCACATAAGGACTTACACTCAAAGATATCTCGCAGCTGAACCCGTAGAAGAGGCATCAGAAGATACAAACAGTTCAGAAAGTAGTGGAGGCGAAGAAGATCATGGGTGTGTAGATGGGGTGAGGCTCGTTCAACTTCTAATAGCGTGTGCCGAAGCGGTGGCTTGTCGCGACAAGTCACACGCTTCCATATTACTATCCGAACTTAAATCGAATGCTTTAGTATTCGGATCCTCATTCCAAAGAGTTGCTTCTTGTTTTGTTCAAGGCCTGACCGAGAGGCTGAATCTGATTCAGCCCATCGGGCCCGCCACGGGCCGGATGCCACCCATGATAATGAACATCATGGATGCAGCCTCGGAAGAAATGGAGGAAGCATTGAGGTTGGTTTGCGAGCTGTGTCCGCACATCCAGTTCGGACACTATGTGGCCAATTCCGTAGTAGTGGAAGCCTTTGAGGGTGAGAGTTTTGTCCATGTTGTGGATCTAGGCATGAGCCTCGGTCTACAACATGGACACCAATGGAGAGGTCTGATCCAGAGCCTCGCCAATCGCGCAGACGACGAACGCGTTGTTCGCTGCCTGCGGATCACGGGAGTAGGGCTCTGCGACAGACTTCAAACCATTGGAGAAGAACTCTCCGTGTACGCAAACAATTTGGGCGTCAACTTGGAGTTCTCAATGGTGAAAAAGAATTTGGAAAATTTGAAACCAGAGGACATAGAAGTGAGGGAAGAAGAGGTTCTTGTGGTGAACAGCATTCTGCAGCTTCATTGTGTGGTGAAGGAAAGCCGCGGGGCTTTGAATTCGGTGCTGCAAATGATTCACGGGCTTGGGCCTAAAGTGTTGGTGATGATGGAGCAGGACTCGAGTCATAACGGACCTTTTTTTCTTGGGAGGTTTATGGAATCATTGCACTATTACTCTGCTATTTTTGACTCATTGGACGTTATGTTGCCAAAATATGACACTAGGAGGGCCAAGATGGAGCAGTTTTACTTCGCTGAGGAAATAAAGAACATTGTGAGCTGTGAGGGGCCGTTGAGGATGGAGAGGCACGAGAGAGTGGACCAGTGGAGAAGAAGAATGAGCAGGGCTGGGTTTCAGGCTGCACCTATTAAGATGGTGGCTCAGGCTAAGCAGTGGCTCCTCAAGAACAAGGTTTGTGAGGGGTACACGGTTGTGGAAGAGAAGGGGTGTTTGGTTCTTGGATGGAAATCGAGGCCTATTGTTGCAGTTTCTTGCTGGAAATGCTGA 1572 0.4771 MAAPLYSAFNGEIDGENLPLAFDIWATELCGCGYYHQYHQPISENNTSTLVFPFCDGPTIRDNKRVKRTVCFPIYNSINCHSFLNTNTNNPNSSSKNSIPKLHFRDHIRTYTQRYLAAEPVEEASEDTNSSESSGGEEDHGCVDGVRLVQLLIACAEAVACRDKSHASILLSELKSNALVFGSSFQRVASCFVQGLTERLNLIQPIGPATGRMPPMIMNIMDAASEEMEEALRLVCELCPHIQFGHYVANSVVVEAFEGESFVHVVDLGMSLGLQHGHQWRGLIQSLANRADDERVVRCLRITGVGLCDRLQTIGEELSVYANNLGVNLEFSMVKKNLENLKPEDIEVREEEVLVVNSILQLHCVVKESRGALNSVLQMIHGLGPKVLVMMEQDSSHNGPFFLGRFMESLHYYSAIFDSLDVMLPKYDTRRAKMEQFYFAEEIKNIVSCEGPLRMERHERVDQWRRRMSRAGFQAAPIKMVAQAKQWLLKNKVCEGYTVVEEKGCLVLGWKSRPIVAVSCWKC 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00108 523 ProSiteProfiles GRAS family profile. 139 522 IPR005202 -
Pumo11g00108 523 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 122 517 IPR005202 -
Pumo11g00108 523 Pfam GRAS domain family 148 522 IPR005202 -
Pumo11g00108 523 MobiDBLite consensus disorder prediction 119 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00108 Pumo-Chr11 3240883 3242454 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00108 145 523 GRAS Transcription Factor Family AT1G66350 37.565 8.21e-74 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo11g00108 GRAS 4.6e-105 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00108 - - gmx:100813548 890.952