Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00103 ATGGAAGGTTCAGATGTTACTTTTGATGTATCTGGGGAAAAGTTCCCTTCTCAAAAGTTGGTGTTGGCTGCTAGATCCCCAGAATTTCGATCTAAATTTTTTAATGGTTTAGATGAGGAAAAGAATGAGATTATTGTAACAGATTTAGAACCAAAGGTTTTTAAGGCCATGCTGCACTTTATCTACAGGGATACTCTTAAAGAAGAGGTGGACATGGTTTCATCAACCACAACTAGTGATTTTCCAGTTTCTGAGACATTGACAACAAAATTGTTAGCTGCAGCAGACAGGTATGGCTTGGGTAGGCTTAGATTGATGTGTGAATCTCATCTTTGTAAGGACATTTGTGTGAATTCTGCAGCCAACATTTTATCCTTGGCTGATCATTGCCATGCCACGGAGTTGAAAGCTGTTTGCCTAAAATTTGCTGCTCAAAATCTAGCAGCGGTGCACCTCATTTTTAAGTACTTCACTTTAGACTGA 483 0.3913 MEGSDVTFDVSGEKFPSQKLVLAARSPEFRSKFFNGLDEEKNEIIVTDLEPKVFKAMLHFIYRDTLKEEVDMVSSTTTSDFPVSETLTTKLLAAADRYGLGRLRLMCESHLCKDICVNSAANILSLADHCHATELKAVCLKFAAQNLAAVHLIFKYFTLD 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00103 160 ProSiteProfiles BTB domain profile. 4 70 IPR000210 GO:0005515
Pumo11g00103 160 Pfam BTB/POZ domain 3 114 IPR000210 GO:0005515
Pumo11g00103 160 CDD BTB_POZ_BPM_plant 1 112 - -
Pumo11g00103 160 SUPERFAMILY POZ domain 3 115 IPR011333 -
Pumo11g00103 160 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 2 142 IPR045005 GO:0016567
Pumo11g00103 160 Gene3D Potassium Channel Kv1.1; Chain A 1 152 IPR011333 -
Pumo11g00103 160 SMART BTB_4 4 115 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00103 Pumo-Chr11 3167181 3168817 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pumo11g00103 BTB 5e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00103 K10523 - gmx:100806769 272.707