Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00102 ATGGCGACACTCTCTAAGTTCACTTTCTCTGGTATTTCTATAGGGAATGTGATGTTTATGTGGATTTCATGTTGTGGCAATGTTGTTGTCGTGTTCCGGAGTGCAACATATGCCGGAAAACCATTGCCAAACCAGAAGAATGTTGTCACAGCACAAGGGAGAACTGATCCCAATGAAAACATTGGAATTTCAATACAAAATTGCAGGATTGATACTGCCCCTGACAATGTTGCAAACTTGAAGTCAACTAAAAATTACTTAGGCAGCGAAGGCACCGACGTCAGGGCGCTCTTCGAGGTCACGCTCCTCGATCAGACCGGCCAGGGCAAGCACAAGGTCCACAGCCATTTCGATCGCTCGCTTGAGAGTGGTCCCTACACGCTCAAGTACAAGCGTAGCATATGGGGGTACAAGCGGTTTTTCAGACGGTCTTTGCTTGAAAGCTCAGATTTCCTCAAGAATGATTGTTTGAAAATCAACTGTACAGTCGGAGTTGTGGTTTCAGCAATTGATTGTCCATAA 522 0.454 MATLSKFTFSGISIGNVMFMWISCCGNVVVVFRSATYAGKPLPNQKNVVTAQGRTDPNENIGISIQNCRIDTAPDNVANLKSTKNYLGSEGTDVRALFEVTLLDQTGQGKHKVHSHFDRSLESGPYTLKYKRSIWGYKRFFRRSLLESSDFLKNDCLKINCTVGVVVSAIDCP 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00102 173 SUPERFAMILY Pectin lyase-like 20 88 IPR011050 -
Pumo11g00102 173 CDD MATH 80 163 IPR002083 GO:0005515
Pumo11g00102 173 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Pumo11g00102 173 Pfam Pectinesterase 25 88 IPR000070 GO:0030599|GO:0042545
Pumo11g00102 173 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 47 167 IPR008974 GO:0005515
Pumo11g00102 173 PANTHER PECTINESTERASE 24 89 - -
Pumo11g00102 173 SUPERFAMILY TRAF domain-like 86 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00102 Pumo-Chr11 3162196 3167117 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00102 26 88 Carbohydrate Esterase AT1G02810 54.688 1.60e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00102 K10523 - gmx:100806769 169.474