LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo11g00101	ATGATGGAGTGCAATAAAGAAGAGGCCGTAAGGGCCAAGGAACTTGCTGAAAAGAAAATGCAAAACAAAGATTTCAATGGGGCTCGAAAATTTGCTCTTAAGGCTCAGCAGCTATATCCTGATTTGGAGAATATCACTCAAATGCTTATTGTTTGTGATGTGCATTGTTCTGCTGAGCAGAAATTGTTTGGCAATGAGACAGACTGGTATAAAATTCTTCAAATTGAGCTGACCGCTAATGATACAACAATTAAGAAGCAATACAGGAAGTTTGCCCTCCAACTTCATCCTGACAAAAACAAGTTTGCCGGTGCAGAAGCTGCATTTAAGCTGATTGGGGAAGCTCAAAGAGTTCTTTTGGATAGAGAAAAACGATCTAGACTTGACATGAATTTGCGCAGGGTTCCAATGAACAGAACTACTATGCCATCTCATCATCAGCAGAATGTTCAGATGAAGTTTAATCCTGTGATGCAAACCAGTGTCAGGCCCAATTTTACAAACTTAAATCCTCAGCAGCAACAACAGTCCAGGCGGGCATCTCATCAGGGGCCTAATGGTGGCCGCCCTACTTTTTGGACTGTGTGCTCATTTTGTTCCGTTAGATATGAGTATTATAGGGAGGTTTTAAACAGATCTCTTCGCTGTCAACATTGCAATAGGCCCTTCATTGCATATGATGTGAATATGCAAGGCACAACACCAGCAACTAATTCAAGTCAGCAAGCTTTTGGTGAGCAGAACCATAGTCAGAATCATGGTGCTTTCAATGTTGGTGTTGGATCTCAAGGTAATTTGCATACTCGCAGGTCCAATACAGAATCACATCAGAAAAAAGGTCCTACTGCTGATGTCTCTGTAAAGCCAAATGGGAAGAGAAGGAGAAAGCGGGTAGCAGAATCCAGTGAAAGTGCCGAATCTGTAGGCAGCACTGATTCTGAATCTGAAGAGGATATGCTTTATGACAAGGATGTTTTTCCTGGTGTTTCTACTCATAGAGAAGGGAATCCACGTAGATCTACACGGCAAAAGCATGAGGTTTCCTACAAGGAGAATGTGAGTGACGATGAAGGGGGTGGATCTCCATCTGGTGCTGGTGAAAATAGTGGGGAGGCATCTAAAATCAATGTTCAGAATGGTTTGGCTGCTGATATGAAAGGTGATACACAAGGGGTAAAGCGGAAGCAGAACTTTTATTCTGAAGAGAGCTTACAAAATTTAAATGAGGAAATTAAGGAGGTGAGAGGAAAAGAGGCAGTGGGCAGCTCAAAGATAGACAAAGCTTCAGAGCATTCACCCTCGAAATCAACAAATCAACCAGAAAATTTTGTTTACCCAGATGCAGAGTTCAGTGACTTTGACAAGGACAAGAAAGAGGGGTCTTTTGCTGTTGGGCAGATTTGGGCTATTTATGATACTGTAGATGGTATGCCTAGATTCTATGCTATAATCAGAAAAGTTCTCTCTCCTGGATTCAAGTTGCGGATAACATGGTTTGAACCAGATCCAGATGAGCAAGATCAAGTCCACTGGTTAGAAGAGCAATTGCCAATTGCTCATGGGAAACATAAACTTGGTAACACTGAAACCACTGAAGATCGTTTGATGTTTTCTCATCTGATTGTTTGTGAAAAGATTGGCCGCTGTACTTATAAAGTATATCCTAGAAAGGGAGAAACTTGGGCTCTTTTTAAAAATTGGGATATCAAATGGCATATGGATGCAAAATCTCATCAGCAGTATGATTTTGAATTTGTTGAAATCTTGTCAGATTATGTTGAAGGTGTGGGAGTTGTTGTTGCATACTTGGCTAAATTGAAAGGTTTTGTGTGTCTCTTCTCTCGAATGAAGGGAGGTAATTGCACATTTCAAATTCCATCAACCGAGTTATTAAGATTCTCTCACAGGGTTCCATCTTTTAAAATGACTGGTCAGGAAAGAGTTGGTGTTCCCGTAGGATCTTATGAACTTGATCCGGTATCCTTGCCAATGAATCTTGAAGAGATTGCTGTTCCTGAACATTTGGAAGTAAAGGATGGTCATTGTCCATCTAGTGGGGTGGGCACAAGGTCTTCAGATATGTTGAAATTCACAATGAACTCGGAGGGAGATGCGTCTACTGCAAAGGTTAATTTGGAAAGAAACAATTCAGCAGAGGAGAACAAGGATCCTGTTGATAATATTGGCAATGGTAGTGATCCTTCAGCTTCAGCTGCAGATGCTTTTGAAATTCCCGATCCTGTGTTCCACAATTTTGATGCTGAGAGGTCCCTTGAAAGGTTTAAGGTTGGTCAGATTTGGGCATTTTATGGTGATGAGGATGGACTGCCAAAATACTATGGTCAGATTAAGAGGGTTAGGACTAGCCCAGATCTTGAGTTGCAAGTTACTTATCTTACTAACTGCTGGTTACCAGAGAATAGTGTTAGATGGGATGATAAGGATATGCTTATTTCCATTGGAAGATTTAAAATCAAAACAGGTGCTCGTCCCTGCACTTATACAAACACCTATTCTGTTTCGCATCAGGTGCAGGTTATTACTGATGGTAAGAAGAAGGAATATGAAATTTTTCCAAGGAAAGGCGAAGTCTGGGCATTGTATAAGAATTGGTCGACTAAAATAAAACGTTCTGATTTGGAAAACCTGGAGTATGACATAGTGGAAGTTGTTGGAGAACATGATTTGTGGATGAATGTTTTACCTTTGGAGTTGGTAAGTGGTTATCATTCAGTTTTCAAGGGCAAGTCAAATGCAGGATCAGCTAGGACCATGAAAATATACTGGAAAGATCTGCTTAGGTTCTCCCACCAAATCCCAGCCTTCAAACTGACTGAAGAACATGATGGCAATCTGAGAGGCTTTTGGGAACTTGATCCGGGAGCAATACCCCTTCACTATTTTAACAACAAATAA	2916	0.4091	MMECNKEEAVRAKELAEKKMQNKDFNGARKFALKAQQLYPDLENITQMLIVCDVHCSAEQKLFGNETDWYKILQIELTANDTTIKKQYRKFALQLHPDKNKFAGAEAAFKLIGEAQRVLLDREKRSRLDMNLRRVPMNRTTMPSHHQQNVQMKFNPVMQTSVRPNFTNLNPQQQQQSRRASHQGPNGGRPTFWTVCSFCSVRYEYYREVLNRSLRCQHCNRPFIAYDVNMQGTTPATNSSQQAFGEQNHSQNHGAFNVGVGSQGNLHTRRSNTESHQKKGPTADVSVKPNGKRRRKRVAESSESAESVGSTDSESEEDMLYDKDVFPGVSTHREGNPRRSTRQKHEVSYKENVSDDEGGGSPSGAGENSGEASKINVQNGLAADMKGDTQGVKRKQNFYSEESLQNLNEEIKEVRGKEAVGSSKIDKASEHSPSKSTNQPENFVYPDAEFSDFDKDKKEGSFAVGQIWAIYDTVDGMPRFYAIIRKVLSPGFKLRITWFEPDPDEQDQVHWLEEQLPIAHGKHKLGNTETTEDRLMFSHLIVCEKIGRCTYKVYPRKGETWALFKNWDIKWHMDAKSHQQYDFEFVEILSDYVEGVGVVVAYLAKLKGFVCLFSRMKGGNCTFQIPSTELLRFSHRVPSFKMTGQERVGVPVGSYELDPVSLPMNLEEIAVPEHLEVKDGHCPSSGVGTRSSDMLKFTMNSEGDASTAKVNLERNNSAEENKDPVDNIGNGSDPSASAADAFEIPDPVFHNFDAERSLERFKVGQIWAFYGDEDGLPKYYGQIKRVRTSPDLELQVTYLTNCWLPENSVRWDDKDMLISIGRFKIKTGARPCTYTNTYSVSHQVQVITDGKKKEYEIFPRKGEVWALYKNWSTKIKRSDLENLEYDIVEVVGEHDLWMNVLPLELVSGYHSVFKGKSNAGSARTMKIYWKDLLRFSHQIPAFKLTEEHDGNLRGFWELDPGAIPLHYFNNK	971

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo11g00101	971	MobiDBLite	consensus disorder prediction	415	431	-	-
	Pumo11g00101	971	MobiDBLite	consensus disorder prediction	234	270	-	-
	Pumo11g00101	971	PANTHER	DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED	2	700	-	-
	Pumo11g00101	971	CDD	DnaJ	68	121	IPR001623	-
	Pumo11g00101	971	Pfam	DnaJ domain	68	129	IPR001623	-
	Pumo11g00101	971	MobiDBLite	consensus disorder prediction	162	187	-	-
	Pumo11g00101	971	MobiDBLite	consensus disorder prediction	234	372	-	-
	Pumo11g00101	971	SUPERFAMILY	Chaperone J-domain	65	142	IPR036869	-
	Pumo11g00101	971	PRINTS	DnaJ domain signature	104	124	IPR001623	-
	Pumo11g00101	971	PRINTS	DnaJ domain signature	88	103	IPR001623	-
	Pumo11g00101	971	PRINTS	DnaJ domain signature	70	88	IPR001623	-
	Pumo11g00101	971	ProSiteProfiles	dnaJ domain profile.	68	132	IPR001623	-
	Pumo11g00101	971	Pfam	Domain of unknown function (DUF3444)	440	646	IPR024593	-
	Pumo11g00101	971	Pfam	Domain of unknown function (DUF3444)	741	947	IPR024593	-
	Pumo11g00101	971	MobiDBLite	consensus disorder prediction	320	353	-	-
	Pumo11g00101	971	SMART	dnaj_3	67	124	IPR001623	-
	Pumo11g00101	971	MobiDBLite	consensus disorder prediction	415	445	-	-
	Pumo11g00101	971	Gene3D	DnaJ domain	65	181	IPR036869	-
	Pumo11g00101	971	MobiDBLite	consensus disorder prediction	705	739	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo11g00101	Pumo-Chr11	3157318	3161498	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo11g00101	5	228	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	35.808	2.07e-31	125

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo11g00101	-		-	gmx:100779228	1765.74