Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g00093 ATGAATAATTTTTCTCATGTTCCCCCCGGTTTTAGGTTCCACCCCACTGATGAAGAACTTGTTGATTACTACCTAAGGAAGAAAGTTACCTCAAGAAGGATTGACCTCGATGTCATAAAAGATGTTGACCTCTATAAAATTGAACCATGGGATCTTCAAGAGCTTTGCAGAATAGGAACAGAAGAGCAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACAGCAGCAGGGTTTTGGAAAGCAACTGGAAGAGACAAAGCAATCTATTCAAAGCATGACTTGATAGGGATGAGGAAAACCTTAGTCTTTTATAAAGGTCGAGCTCCCAATGGACAAAAATCAGATTGGATCATGCACGAGTATCGACTTGAAACAGATGAAAATGGCACACCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAAAAGAGACTACCAACCATGCGTAAACTGAGTGAGCATGATTCTCCCTGTTGGTATGATGACCAAGTCTCTTTCATGCAAGACTTGGACTCACCAAAGCAAAGCTCTCAACCTAATTTGCCCTACCATCAGTTCCAATATCCTTGCAAGAAAGAGTTAGATTTTCCATACCATCATTTACCTCTCCAGCTTCCACTAGAGAACCAAAAATTGCTCCAATCTGCAGCCTCCAACTCAATGACACCATATGGTATAGAAGAAAACCCTAATGCCATGCAGCCAGCATCATCAATCATGCATCAAGTTCAACACCAAGGTCAACAAAATTTTCAGGCAGTAGTGTTTGGAAACAACAATGCCAATGAACAACAAGTGGCTGATTGGAGAGCTCTTGACAAGTATGTTGCTTCACAACTTAGTCAAGAAGATGCATCCAAAGACAATAGTTACTCAAACACAGGCAACATTTTTCAAGTCAAGAACAATAGCAATATTGAACAGTTGAGGGACTTGGACAAGGAAGAAATGATGCCTGAAAATGCCTCAACATCAAACTCAAGCTGTCCAATTGACATGTGGAAATAG 1047 0.404 MNNFSHVPPGFRFHPTDEELVDYYLRKKVTSRRIDLDVIKDVDLYKIEPWDLQELCRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRLPTMRKLSEHDSPCWYDDQVSFMQDLDSPKQSSQPNLPYHQFQYPCKKELDFPYHHLPLQLPLENQKLLQSAASNSMTPYGIEENPNAMQPASSIMHQVQHQGQQNFQAVVFGNNNANEQQVADWRALDKYVASQLSQEDASKDNSYSNTGNIFQVKNNSNIEQLRDLDKEEMMPENASTSNSSCPIDMWK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g00093 348 FunFam NAC domain-containing protein 16 160 - -
Pumo11g00093 348 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 291 - -
Pumo11g00093 348 MobiDBLite consensus disorder prediction 328 348 - -
Pumo11g00093 348 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Pumo11g00093 348 Gene3D NAC domain 16 158 IPR036093 GO:0003677|GO:0006355
Pumo11g00093 348 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Pumo11g00093 348 MobiDBLite consensus disorder prediction 332 348 - -
Pumo11g00093 348 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g00093 Pumo-Chr11 2902530 2906898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g00093 1 348 NAC Transcription Factor Family AT1G12260 58.889 2.15e-136 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo11g00093 NAM 4.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g00093 - - gmx:100775867 645.195